Re: [gmx-users] Help me with energy groups please.

2015-06-20 Thread Justin Lemkul
On 6/20/15 4:48 PM, Dan Sponseller wrote: For my main MD experiment, I run just the energy group System. This is fine. Then I take one configuration and run a minimization. For the minimization, I have two energy groups: peg2000 (my polymer), and Water so that I can inspect interaction energ

[gmx-users] Help me with energy groups please.

2015-06-20 Thread Dan Sponseller
For my main MD experiment, I run just the energy group System. This is fine. Then I take one configuration and run a minimization. For the minimization, I have two energy groups: peg2000 (my polymer), and Water so that I can inspect interaction energies. Here is the output from gmx energy: Ene