Re: [gmx-users] How To Calculate The Energy From The Coordinates Of Pdb File?

2019-01-15 Thread Justin Lemkul
On 1/14/19 3:10 AM, Mehdi Mirzaie wrote: Dear Groamcs User, I would be appreciated if you guide me, how to extract pairwise energy (between residues) from the coordinates of PDB file? Since the Pdb files are already minimized, obviously, there is no needed to run energy minimization step.

Re: [gmx-users] How To Calculate The Energy From The Coordinates Of Pdb File?

2019-01-14 Thread Mehdi Mirzaie
Dear Groamcs User, I would be appreciated if you guide me, how to extract pairwise energy (between residues) from the coordinates of PDB file? Since the Pdb files are already minimized, obviously, there is no needed to run energy minimization step. *Mehdi Mirzaie(PhD),* Department of Applied

Re: [gmx-users] How To Calculate The Energy From The Coordinates Of Pdb File?

2018-12-28 Thread Braden Kelly
-users@maillist.sys.kth.se Subject: [gmx-users] How To Calculate The Energy From The Coordinates Of Pdb File? Dear Groamcs User, I am new in using Gromacs. I would be appreciated if you guide me, how to calculate energy from the coordinates of PDB file? In fact I have thousands of Pdb files and woul

[gmx-users] How To Calculate The Energy From The Coordinates Of Pdb File?

2018-12-28 Thread Mehdi Mirzaie
Dear Groamcs User, I am new in using Gromacs. I would be appreciated if you guide me, how to calculate energy from the coordinates of PDB file? In fact I have thousands of Pdb files and would like to calculate energy for each of them using Gromacs. Since the Pdb files are already minimized, obvio