Re: [gmx-users] How to avoid the infinite potential energy in simulations of dimers?

2020-02-22 Thread Justin Lemkul
621 E-mail: 15110700...@fudan.edu.cn Message: 5 Date: Fri, 21 Feb 2020 09:21:34 -0500 From: Justin Lemkul To: gmx-us...@gromacs.org Subject: Re: [gmx-users] How to avoid the infinite potential energy in simulations of dimers? Message-ID: Content-Type: text/plain; charset=gbk; format=flow

Re: [gmx-users] How to avoid the infinite potential energy in simulations of dimers?

2020-02-21 Thread Qing Liu
gt;From: Justin Lemkul >To: gmx-us...@gromacs.org >Subject: Re: [gmx-users] How to avoid the infinite potential energy in > simulations of dimers? >Message-ID: >Content-Type: text/plain; charset=gbk; format=flowed > > > >On 2/21/20 5:11 AM, Qing Liu wrote: >> Dear

Re: [gmx-users] How to avoid the infinite potential energy in simulations of dimers?

2020-02-21 Thread Justin Lemkul
On 2/21/20 5:11 AM, Qing Liu wrote: Dear Gromacs users, I run some simulations of dimers, a protein binding another protein. When these simulations step into equilibriumstages, they will crash with the following: Step 2029: The total potential energy is nan, w

[gmx-users] How to avoid the infinite potential energy in simulations of dimers?

2020-02-21 Thread Qing Liu
Dear Gromacs users, I run some simulations of dimers, a protein binding another protein. When these simulations step into equilibriumstages, they will crash with the following: Step 2029: The total potential energy is nan, which is not finite. The LJ and