Dear Peter,
Thank you, I find the answer now. Sorry I was using a pdb that the SS length is
too long to form the SS bond. After changing to a correct one, I got the
solution.
I think, if we have more than one chain, we MUST use "-merge" option, so that
the interchain SS bond can shown in
Hi Cheng,
What’s the distance between the two interchain SG atoms? You can either tune
the distance used for autodetecting cys bonds, or just specify all of them
using the command line. Try `python martinize.py -h`
Peter
PS. The cgmartini.nl forum is also back online, which might be a better
Dear Martini friends,
My protein has 10 Cys with 5 disulfind bonds in light chain (LC) and heavy
chain (HC):
) Interchain disulfide bond: LC214 ?C HC220
) Intrachain disulfide of LC: LC23 ?C LC88, LC134 ?C LC194
) Intrachain disulfide of HC: HC144 ?C HC200, HC96 ?C HC22
Using this command
