Hi all,
Among the methods available, which one is the best/more rigorous/popular
for membrane protein insertion/orientation in model bilayers
(InflateGRO, Memembed, g_membed, etc.)?
Thanks in advance
Yasser
--
Yasser Almeida Hernández
PhD student
Institute of Biochemistry and Molecular Biol
Hi Yasser,
InflateGRO and g_membed do not predict the insertion or orientation, but
require the protein to be oriented already. With InflateGRO2, Christian
Kandt also brought out LAMBADA which may help aligning a protein with the
membrane. memembed is also an orientation predictor. However, I usua
Hi there,
Lambada + InflateGRO2 is a good combination.
As for which method is the best one is difficult to say. If you read the
articles you will have a nice idea of the pros and cons of each method and
then you can decide by yourself. The only thing I can say is that after
reading them all I wen
nd it seems tha the system is blowing up...
Any thoughts?
Yasser
Am 21.08.2015 um 12:00 schrieb
gromacs.org_gmx-users-requ...@maillist.sys.kth.se:
Date: Fri, 21 Aug 2015 10:31:58 +0100
From: "Catarina A. Carvalheda dos Santos"
To: Discussion list for GROMACS users
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