Hi,
You should contact the tool's authors for that issue. I don't have any
experience with it.
Good luck
Dries
Hi Rompaey,
Thanks for your valuable advice. As per your advice I went through the
paper (
https://www.google.be/url?sa=t&source=web&rct=j&url=http://www.ncbi.nlm.nih.gov/pmc/articles/P
Hi Rompaey,
Thanks for your valuable advice. As per your advice I went through the
paper (
https://www.google.be/url?sa=t&source=web&rct=j&url=http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2872215/&ved=0ahUKEwjq3I7M-YbMAhXI_w4KHQeeCX8QFggoMAU&usg=AFQjCNHnkqQys4V7UYCURTPZyKQEYrGdWQ&sig2=rpmfKD8E07TCQ_
Hi,
I'd recommend alchemistry.org as a good place to start. Justin's tutorial
(the one you linked to) is an example of an equilibrium free energy method,
not a slow growth method. As a general rule, equilibrium methods are easier
to use and are recommended for people without extensive experience.
Hi everyone,
I want to calculate difference in folding free energy due to certain
mutations. I want to follow the slow growth method as mentioned in:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/free_energy/02_topology.html
However I don't know how to prepare dual topology
