Re: [gmx-users] Pressure Fluactiation

2017-11-22 Thread ali akgün
I will run with bigger nsteps (like monte carlo :D) , thank you for reply sir. On Wed, Nov 22, 2017 at 11:17 PM, Mark Abraham wrote: > Yes, by running longer, or on a larger system, just as statistical > mechanics predicts. > > Mark > > On Wed, Nov 22, 2017 at 10:16 PM ali akgün > wrote: > > >

Re: [gmx-users] Pressure Fluactiation

2017-11-22 Thread Mark Abraham
Yes, by running longer, or on a larger system, just as statistical mechanics predicts. Mark On Wed, Nov 22, 2017 at 10:16 PM ali akgün wrote: > Hİ, > Thank you for reply but can i minimize fluctuation? > > On Wed, Nov 22, 2017 at 11:05 PM, Mark Abraham > wrote: > > > Hi, > > > > It's hard to

Re: [gmx-users] Pressure Fluactiation

2017-11-22 Thread ali akgün
Hİ, Thank you for reply but can i minimize fluctuation? On Wed, Nov 22, 2017 at 11:05 PM, Mark Abraham wrote: > Hi, > > It's hard to say anything in the absence of any numbers about average or > fluctuations. Do check out > http://www.gromacs.org/Documentation/Terminology/Pressure > > Mark > >

Re: [gmx-users] Pressure Fluactiation

2017-11-22 Thread Mark Abraham
Hi, It's hard to say anything in the absence of any numbers about average or fluctuations. Do check out http://www.gromacs.org/Documentation/Terminology/Pressure Mark On Wed, Nov 22, 2017 at 9:59 PM ali akgün wrote: > Hİ all, > > I ran simulation of pvdf(ligand) in solution. My problem is pre

[gmx-users] Pressure Fluactiation

2017-11-22 Thread ali akgün
Hİ all, I ran simulation of pvdf(ligand) in solution. My problem is pressure fluctuation, My system's pressure fluctuated around reference pressure and average pressure is not equal to my reference pressure. I did well minimisation and nvt run for system before npt run. What should i do about ave