[gmx-users] Recovery simulation error

2018-11-16 Thread Mario Andres Rodriguez Pineda
Hi Gromacs Users. I has been a simulation with gromacs 2016 but my simulation stopped by an energy break. i try to restar in the last checkpoint but this does work and send me this error: Expected output files not present or named differently: cbd211_md.log cbd211_md.xtc cbd211_md.trr cbd21

Re: [gmx-users] Recovery simulation error

2018-11-16 Thread Bratin Kumar Das
Use -deffnm flag and specify the name ..same as the previous output file...do not forget to give the -append flag On Sat, Nov 17, 2018, 3:09 AM Mario Andres Rodriguez Pineda < mand...@iq.usp.br> wrote: > Hi Gromacs Users. > I has been a simulation with gromacs 2016 but my simulation stopped by an

Re: [gmx-users] Recovery simulation error

2018-11-16 Thread Bratin Kumar Das
Use the following command... Gmx mdrun -v -s cbd211_md.tpr -cpi cbd211_md.cpt -append -deffnm cbd211_md On Sat, Nov 17, 2018, 9:26 AM Bratin Kumar Das <177cy500.bra...@nitk.edu.in> wrote: > Use -deffnm flag and specify the name ..same as the previous output > file...do not forget to give the -app

Re: [gmx-users] Recovery simulation error (Bratin Kumar Das)

2018-11-18 Thread Edjan Silva
-- > > Message: 1 > Date: Sat, 17 Nov 2018 09:33:24 +0530 > From: Bratin Kumar Das <177cy500.bra...@nitk.edu.in> > To: gmx-us...@gromacs.org > Subject: Re: [gmx-users] Recovery simulation error > Message-ID: &g

Re: [gmx-users] Recovery simulation error (Bratin Kumar Das)

2018-11-19 Thread Mario Andres Rodriguez Pineda
t; ------ > > > > Message: 1 > > Date: Sat, 17 Nov 2018 09:33:24 +0530 > > From: Bratin Kumar Das <177cy500.bra...@nitk.edu.in> > > To: gmx-us...@gromacs.org > > Subject: Re: [gmx-users] Recovery simu