Re: [gmx-users] Response required

2019-01-03 Thread Mark Abraham
Hi, I suggest you explore the LigParGen software for its documentation and help fora. This one is particular to GROMACS. Mark On Fri, Dec 28, 2018 at 3:50 PM wrote: > > Hi everyone > > When I submit a PEO chain consists of 23 monomers to LigParGen > web-based service to make a topology file,

Re: [gmx-users] Response required

2019-01-01 Thread Dallas Warren
Contact those that provided the server http://zarbi.chem.yale.edu/ligpargen/contact.html This is not to do with GROMACS. Catch ya, Dr. Dallas Warren Drug Delivery, Disposition and Dynamics Monash Institute of Pharmaceutical Sciences, Monash University 381 Royal Parade, Parkville VIC 3052 dallas.

Re: [gmx-users] Response required

2018-12-29 Thread Smith, Micholas D.
: gromacs.org_gmx-users-boun...@maillist.sys.kth.se on behalf of molashahimar...@aut.ac.ir Sent: Friday, December 28, 2018 9:50:05 AM To: gromacs.org_gmx-users@maillist.sys.kth.se Subject: [gmx-users] Response required Hi everyone When I submit a PEO chain consists of 23 monomers to LigParGen web-based

[gmx-users] Response required

2018-12-28 Thread molashahimaryam
Hi everyone When I submit a PEO chain consists of 23 monomers to LigParGen web-based service to make a topology file, there is no problem. But when I submit a PEO chain consists of 100 monomers I give an error: * Found residue ligand OXY * Unknown error. Please, check the input file. If yo