Re: [gmx-users] Running GROMACS on cluster

2017-03-17 Thread Justin Lemkul
On 3/17/17 7:22 AM, Yasser Almeida Hernández wrote: Hi all, I am strugling to run GROMACS on a cluster with SGE queue system, but I have any acceleration. The verbose output says that it will end is September 2017!!. This is the script I am using to run. What does your system administrator

[gmx-users] Running GROMACS on cluster

2017-03-17 Thread Yasser Almeida Hernández
Hi all, I am strugling to run GROMACS on a cluster with SGE queue system, but I have any acceleration. The verbose output says that it will end is September 2017!!. This is the script I am using to run. #!/bin/bash #$ -cwd #$ -pe parallel 24 #$ -q main.q #name of the queue #$ -e

[gmx-users] Running GROMACS in cluster with SGE

2017-01-12 Thread Yasser Almeida Hernández
Hi all, I am trying to run a simulation on a cluster with SGE queue system with this script: *** #!/bin/bash #$ -cwd #$ -pe parallel 16 #number of cores #$ -q main.q #name of the queue #$ -q mai...@xbes23.akbester.zz #one can choose particular node #$ -e stderr.log # redirections for