Dear Users I am trying to calculate salt bridges between a DNA and a protein from a COM pulling simulation trajectory. Searching the forum I found a post mentioning that "g_dist" is better in this regard compared to "g_hbond".
Post link : http://t91121.science-biology-gromacs-user.biotalk.us/salt-bridge-calculations-t91121.html Then there is the "g_saltbr" tool. I am confused now as to what to use. If I want to use "g_dist" how should I proceed ? Thanks & Regards Agnivo Gosai Grad Student, Iowa State University. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
