Re: [gmx-users] Scc order parameter

2016-08-15 Thread Nikhil Maroli
There are some python codes to do that., Google it -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https:/

[gmx-users] Scc order parameter

2016-08-14 Thread Sahithya S Iyer
Hi All, Can one calculate Scc order parameter using gmx order ? I have tried the following: gmx order -f ***.xtc -n ***.ndx -s ***.tpr -od ***.xvg This gives me the deuterium order parameter (Scd) . But i am unsure how Scc is calculated. Can someone please help me with this. Thanks ! - Sahithya