[gmx-users] Script to submit the md simulations on cluster.

2015-08-23 Thread Seera Suryanarayana
Dear gromacs users, I would like to submit the mdrun on cluster. I have written a shell script for submission as following. EXECUTABLE=./mdrun_mpi465 ARGUMENTS = -v -deffnm md_0_1.tpr INPUT_FILES = file:///home/suryanarayana1599/md.mdp, file:///home/suryanarayana1599/npt.cpt, file:///home/suryana

Re: [gmx-users] Script to submit the md simulations on cluster.

2015-08-24 Thread Mark Abraham
Hi, No, we can't. Every cluster is set up differently. You have to consult your local documentation and sysadmins. That said, shell scripts tend to prefer NAME=value ie without spaces Mark On Mon, Aug 24, 2015 at 7:28 AM Seera Suryanarayana wrote: > Dear gromacs users, > > I would like to su