Re: [gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb

Thank Tserjk... This worked successfully...It was really a great help.. On Fri, May 30, 2014 at 4:26 AM, Tsjerk Wassenaar wrote: > [image: Boxbe] This message is eligible > for Automatic Cleanup! (tsje...@gmail.com) Add cleanup rule >

Re: [gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb

I used to have this problem in pymol as well. When I upgraded pymol to version 1.7, the problem was fixed and the whole protein would be displayed. On Wed, May 28, 2014 at 10:19 PM, bharat gupta wrote: > I checked the structure in VMD, it shows all the chains now but the problem > is that the en

Re: [gmx-users] Secondary structure not visible afterconvertingfrom .gro to .pdb

I checked the structure in VMD, it shows all the chains now but the problem is that the entire protein structure is considered as One chain (X)... The same is with .gro file i.e. all ten chains are labelled as X... On Thu, May 29, 2014 at 11:11 AM, Justin Lemkul wrote: > [image: Boxbe]