Thanks a lot ...
On Sun, Feb 18, 2018 at 9:19 PM, Justin Lemkul wrote:
>
>
> On 2/18/18 6:05 AM, Sundari wrote:
>
>> Thank You :)
>>
>> I have a little doubt now. If I want total percentage of all 8 secondary
>> structures separately i.e SS (%) than I can get this by simply
On 2/18/18 6:05 AM, Sundari wrote:
Thank You :)
I have a little doubt now. If I want total percentage of all 8 secondary
structures separately i.e SS (%) than I can get this by simply averaging
the propensities of ss ?
No, that will give you a constant number. All residues have to be in
Thanks for the addition.
On 16 Feb 2018 6:22 pm, "Justin Lemkul" wrote:
>
>
> On 2/16/18 3:40 AM, Subhomoi Borkotoky wrote:
>
>> Hello,
>>
>> I believe *do_dssp* will do the trick. Generate the *.xpm* matrix file ,
>> it
>> contains the required information.
>>
>
> Only
Thank You :)
I have a little doubt now. If I want total percentage of all 8 secondary
structures separately i.e SS (%) than I can get this by simply averaging
the propensities of ss ?
On Fri, Feb 16, 2018 at 6:21 PM, Justin Lemkul wrote:
>
>
> On 2/16/18 3:40 AM, Subhomoi
On 2/16/18 3:40 AM, Subhomoi Borkotoky wrote:
Hello,
I believe *do_dssp* will do the trick. Generate the *.xpm* matrix file , it
contains the required information.
Only indirectly, but scount.xvg has all that is needed, the number of
residues in a given secondary structure as a function of
Hello,
I believe *do_dssp* will do the trick. Generate the *.xpm* matrix file , it
contains the required information.
Regards,
S. Borkotoky
On Fri, Feb 16, 2018 at 1:30 PM, Sundari wrote:
> Dear gromacs users,
>
> can any one please tell me that how we get the secondary
Dear gromacs users,
can any one please tell me that how we get the secondary structure
propensity or secondary structure content(%) as a function of simulation
time.
I used "gmx do_dssp" but it gives me number of residues forming the
secondary structure vs simulation time. is it same thing or