Re: [gmx-users] Setting Non-bonded Scaling Constant for Amber FF

2014-08-12 Thread Johnny Lu
Thanks for the answer! On Tue, Aug 12, 2014 at 12:00 PM, Justin Lemkul wrote: > > > On 8/12/14, 11:57 AM, Johnny Lu wrote: > >> Hi. >> >> I'm a first year PhD student, and wonder if we have to set the equivalent >> of scnb and scee (1-4 nonbond scaling facor for vdw and for electrostatic) >> in

Re: [gmx-users] Setting Non-bonded Scaling Constant for Amber FF

2014-08-12 Thread Justin Lemkul
On 8/12/14, 11:57 AM, Johnny Lu wrote: Hi. I'm a first year PhD student, and wonder if we have to set the equivalent of scnb and scee (1-4 nonbond scaling facor for vdw and for electrostatic) in the gromacs mdp file when we use the Amber99SB force field in gromacs? You don't. These values

[gmx-users] Setting Non-bonded Scaling Constant for Amber FF

2014-08-12 Thread Johnny Lu
Hi. I'm a first year PhD student, and wonder if we have to set the equivalent of scnb and scee (1-4 nonbond scaling facor for vdw and for electrostatic) in the gromacs mdp file when we use the Amber99SB force field in gromacs? Thank you in advance. -- Gromacs Users mailing list * Please search