Hi,
I've tried to set up implicit solvent simulations in Gromacs 5.0.2. It
is recommended that one uses PBC=no and infinite cutoffs for implicit
solvent (GBSA) simulations. However, if I use the Verlet cutoff
scheme, grompp throws an error, saying that Verlet doesn't support
PBC=no. If I use
Hi,
That is indeed a current limitation. There's plans to make infinite cutoffs
possible before we remove the group scheme. Not sure if there is draft code
yet.
The implicit solvation code, even in the group scheme has had essentially
no testing since 4.6 (e.g. search the archives for other such