Re: [gmx-users] Vmd error

Hi, You have to load the .gro file which is corresponding to the trajectory. If you're following the tutorial and the naming convention the file you supposed to load prior to trajectory is npt.gro. If it is something else- VMD will tell you the exact problem as Justin pointed out. -- Gromacs User

Re: [gmx-users] Vmd error

On 6/16/17 6:12 AM, Quyen V. Vu wrote: Hi there I extended my simulation of a free protein from 100ns to 150ns. Corresponding files are extend.gro and extend.xtc. I applied pbc conditions and my new xtc s newmd.xtc. I tried to visualise my trajectory in vmd I uploaded the extend.gro file a

Re: [gmx-users] Vmd error

On 6/16/17 12:33 AM, RAHUL SURESH wrote: I extended my simulation of a free protein from 100ns to 150ns. Corresponding files are extend.gro and extend.xtc. I applied pbc conditions and my new xtc s newmd.xtc. I tried to visualise my trajectory in vmd I uploaded the extend.gro file and loaded

Re: [gmx-users] Vmd error

Hi there > > I extended my simulation of a free protein from 100ns to 150ns. > Corresponding files are extend.gro and extend.xtc. > I applied pbc conditions and my new xtc s newmd.xtc. > > I tried to visualise my trajectory in vmd > > I uploaded the extend.gro file and? loaded newmd.xtc in gro fil

Re: [gmx-users] Vmd error

To: "gmx-us...@gromacs.org" Sent: Friday, 16 June 2017, 9:04 Subject: [gmx-users] Vmd error I extended my simulation of a free protein from 100ns to 150ns. Corresponding files are extend.gro and extend.xtc. I applied pbc conditions and my new xtc s newmd.xtc. I tried

[gmx-users] Vmd error

I extended my simulation of a free protein from 100ns to 150ns. Corresponding files are extend.gro and extend.xtc. I applied pbc conditions and my new xtc s newmd.xtc. I tried to visualise my trajectory in vmd I uploaded the extend.gro file and loaded newmd.xtc in gro file. But I couldn't visual