Hi Carlos,
You can make one very easily yourself by taking a pdb of one CHARRM36
POPC lipid and using pdb2gmx. You only then need to make very minor
modifications to convert the .top into an .itp.
Cheers
Tom
On 12/14/2014 08:58 PM, Carlos Navarro Retamal wrote:
Dear Tsjerk,
Could you pleas
Dear Tsjerk,
Could you please send me the popc.itp file for chamm36 forcefield?
If you have any troubles with my institutional email account, try to my gmail
account (it is on my signature)
Best regards,
Carlos
--
Carlos Navarro Retamal
Bioinformatic engineer
Ph.D(c) in Applied Science, Univer
Hi everyone,
First of all thanks to both of you for your quick replies.
Dear Tsjerk,
I’ll be much appreciated if you could send me the *itp file of POPC.
Thanks a lot,
Carlos
--
Carlos Navarro Retamal
Bioinformatic engineer
Ph.D(c) in Applied Science, Universidad de Talca, Chile
Center of Bioi
Hey,
The all atom mapping of Martini to CHARMM36 is available in
backward/initram, so the conversion can be done directly. You only need to
have a CHARMM36 POPC itp file. I can provide one if needed.
Cheers,
Tsjerk
On Dec 13, 2014 3:38 PM, "Justin Lemkul" wrote:
>
>
> On 12/13/14 12:47 AM, Car
On 12/13/14 12:47 AM, Carlos Navarro Retamal wrote:
Dear gromacs users,
I just ran a CG simulation of a system consisting in a protein embedded in a
POPC membrane solvated in water.
After that i ran the script .initram to obtain an AA representation of my
system (gromos54a7), but sadly i coul
Dear gromacs users,
I just ran a CG simulation of a system consisting in a protein embedded in a
POPC membrane solvated in water.
After that i ran the script .initram to obtain an AA representation of my
system (gromos54a7), but sadly i couldn’t find a *.itp with the description of
the hydro
