Thanks Justin. I have very recently started doing MD, guided by Gromacs
tutorials; not aware of this issue. Thanks for you suggestion, I will try with
Amber ff.
Sucharita Dey,PhD, Research Fellow, Cancer Science Institute of Singapore,
National University of Singapore. 14, Medical Drive,
Hello,
My protein is pr-DNA complex, it is identifying DNA terminus and searching for
N and C in tdb file giving error. When I select -ter and specify none as
termini , it still gives error saying
There is a dangling bond at at least one of the terminal ends. Fix your
coordinate file, add a
