To: gmx-us...@gromacs.org
Subject: Re: [gmx-users] asking for N and C termini for DNA and giving error
On 3/16/14, 11:35 PM, Sucharita Dey wrote:
> Hello,
> Thanks Justin.
> Since my protein has a modified DNA residue (methyl cytosine) I have copied
> the "gromos53a6.ff"
On 3/16/14, 11:35 PM, Sucharita Dey wrote:
Hello,
Thanks Justin.
Since my protein has a modified DNA residue (methyl cytosine) I have copied the "gromos53a6.ff" folder as well as the
"residuetypes.dat" file in my working directory and modified them, where I have inserted my modified DNA residu
ul
[jalem...@vt.edu]
Sent: Friday, March 14, 2014 8:02 PM
To: gmx-us...@gromacs.org
Subject: Re: [gmx-users] asking for N and C termini for DNA and giving error
On 3/14/14, 7:05 AM, Sucharita Dey wrote:
>
> Hello,
>
> My protein is pr-DNA complex, it is identifying DNA terminus and sea
On 3/14/14, 7:05 AM, Sucharita Dey wrote:
Hello,
My protein is pr-DNA complex, it is identifying DNA terminus and searching for
N and C in tdb file giving error. When I select -ter and specify none as
termini , it still gives error saying
"There is a dangling bond at at least one of the t
Hello,
My protein is pr-DNA complex, it is identifying DNA terminus and searching for
N and C in tdb file giving error. When I select -ter and specify none as
termini , it still gives error saying
"There is a dangling bond at at least one of the terminal ends. Fix your
coordinate file, add a
