On 7/12/19 1:54 PM, Prasanth G, Research Scholar wrote:
Dear Justin,
Thank you for your inputs.
After using GridmatMD. I obtained the following results -
Area per lipid is 62.696275 ± 0.545 Angstrom (square)
Average thickness of the upper and lower membranes is 3.66 ± 0.28 Angstrom
(square)
Dear Justin,
Thank you for your inputs.
After using GridmatMD. I obtained the following results -
Area per lipid is 62.696275 ± 0.545 Angstrom (square)
Average thickness of the upper and lower membranes is 3.66 ± 0.28 Angstrom
(square)
I am also attaching the graphs for lateral displacement of
On 7/11/19 12:14 PM, Prasanth G, Research Scholar wrote:
Dear Roshan,
Thank you for your response. I thought that the lipid also behaves as a
solvent in the case of membrane simulation. we even try to make sure the
set temperature (starting from equilibration) is beyond the phase
transition
Dear Roshan,
Thank you for your response. I thought that the lipid also behaves as a
solvent in the case of membrane simulation. we even try to make sure the
set temperature (starting from equilibration) is beyond the phase
transition temperature. I wonder what sort of impact this will have on
Dear all,
I am carrying out a simulation to equilibrate lipid bilayer (POPC) in
water, which I would like to use for membrane protein simulation.
Is there a way to know, if a lipid bilayer simulation has converged or not?
--
Regards,
Prasanth.
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