Re: [gmx-users] error in NVT run

2017-07-10 Thread Hermann, Johannes
Hello Aman, this probably means that your system is not well equilibrated. You can try a smaller time step. But I would also recommend to google the error and you will find a lot of qualified suggestions. All the best Johannes On 10.07.2017 14:33, Aman Deep wrote: hello, I was trying to

[gmx-users] error in NVT run

2017-07-10 Thread Aman Deep
hello, I was trying to simulate a protein of 1200 residues, during NVT run I got error repeatedly that is: *step 11: Water molecule starting at atom 115665 can not be settled.* *Check for bad contacts and/or reduce the timestep if appropriate.* please tell me what is reason for it and how to sol