hi gromacs users
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Dear Justin,
Thank you for your reply. Yeah I have modified my force
field to include the phosphorylated Serine residue.
Below is the pdb2gmx command employed
pdb2gmx -f alpha_ser129p.pdb -o alpha_sep129p.gro -ff gromos43a1 -ignh
error :
Fatal error:
Atom OXT in residue ALA 140