Re: [gmx-users] gmx hbond query

2019-05-09 Thread Najamuddin Memon
Make index of water mediated hydrogens and DNA bases so that DNA bases are in separate group and water mediated hydrogens in separate group in drop down menu On Thu, May 9, 2019, 11:54 AM wrote: > Dear all > I want to determine the water mediated hydrogen between DNA bases and > small molecule.

[gmx-users] gmx hbond query

2019-05-08 Thread spss4
Dear all I want to determine the water mediated hydrogen between DNA bases and small molecule. What extra flag should I use in gmx hbond command? Is there any other option to capture the water mediated Hbonds? Please suggest something. Sunipa Sarkar -- Gromacs Users mailing list * Please s