[gmx-users] how to increase vacuum thickness in a periodic system

2014-02-26 Thread decaiyu
Dear All, I ran a NVT simulation with a layer of oil+vaccuum. Because of periodic boundary condition, there are some molecules on the top of vaccuum layer. Now I want to increase the vaccum thickness so that I can add some water in it. Is there a simple way to do that? The molecules on the top of

Re: [gmx-users] how to increase vacuum thickness in a periodic system

2014-02-26 Thread Dr. Vitaly Chaban
editconf -box X Y Z Dr. Vitaly V. Chaban On Wed, Feb 26, 2014 at 7:58 PM, decaiyu d...@dow.com wrote: Dear All, I ran a NVT simulation with a layer of oil+vaccuum. Because of periodic boundary condition, there are some molecules on the top of vaccuum layer. Now I want to increase the