True, insane is originally made for Martini, but I *think* it should work
for atomistic as well. Otherwise, make the Martini system with insane,
simulate for a short while, and then convert it to atomistic with
backward.py.
I don't have any experience with charmm-gui myself, so I can't help you
fu
Dear Peter, thank You for responce!
I've already prepared toplogy file, here is a content:
; Include forcefield parameters
#include "charmm36-jul2017.ff/forcefield.itp"
#include "/home/dikov/alex/WORK/lipid/charmm36.itp"
#include "LIG.itp"
; Include chain topologies
#include "topol_Protein_
Hi all!
I have a question concerning immersion of the ion channel (four subunits
with extracellular domains and a bundles of helixes) into the lipid
bilayer. 6 years ago I used some tutorial or mailing lists, which described
the way from KALP15 tutor. With CCR5 model there were no problems at all
