Re: [gmx-users] looping job: time not updating

2014-03-14 Thread Mark Abraham
On Mar 14, 2014 1:04 AM, gromacs query gromacsqu...@gmail.com wrote: Hi Jutsin Thanks, I was thinking that .cpt has all the information which I assumed would work like AMBER restart file to read time from .cpt (~ amber restart) file. It does, but the grompp workflow creates the opportunity

[gmx-users] looping job: time not updating

2014-03-13 Thread gromacs query
Hi All Though its mentioned here how to restart jobs: http://www.gromacs.org/Documentation/How-tos/Extending_Simulations but I tried to run something like this (by scripting) but copying here how script is looping jobs: #stage 1 grompp -f npt.mdp -c conf_1ns.gro -t state_1ns.cpt -p topol.top -o