On 8/29/16 9:20 PM, OuyangYanhua wrote:
The minimum protein-image distance is less than the value 2.0nm, such as t
around 1.6nm above. Does it mean my simulation is failed in the box size set?
Please read the first sentence of my previous reply.
-Justin
在 2016年8月29日,下午8:58,Justin Lemkul
The minimum protein-image distance is less than the value 2.0nm, such as t
around 1.6nm above. Does it mean my simulation is failed in the box size set?
> 在 2016年8月29日,下午8:58,Justin Lemkul 写道:
>
>
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> On 8/29/16 5:02 AM, YanhuaOuyang wrote:
>> Hi,
>> I am running a REMD of
On 8/29/16 5:02 AM, YanhuaOuyang wrote:
Hi,
I am running a REMD of a disordered protein, I visualized the trajectory in
VMD and I found that the protein is very close to the box edge.
Then I use "gmx mindist " to check if a protein has seen its periodic image during
simulation. When
Hi,
I am running a REMD of a disordered protein, I visualized the trajectory in
VMD and I found that the protein is very close to the box edge.
Then I use "gmx mindist " to check if a protein has seen its periodic
image during simulation. When I used the command "gmx mindist -f