Dear GMX users I want to generate a topology for my peptide ligand, but I dont know if I can use "gmx pdb2gmx -f peptide ligand-protein complex.pdb -o peptide ligand-protein complex.gro -water spce -ignh" ?would you please advice me that how can I generate a peptide ligand topology file? I think , it is not needed to use external servers like ATB and I can use pdb2gmx to generate peptide ligand topology.
Thanks in advanceFarial -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
