[gmx-users] problem with introducing a new structure in gromacs, please help if anybody knows

2018-12-10 Thread banijamali_fs
Hi there, I'm working on MOFs ( metal organic frameworks) with gromacs, before starting the simulation, I should introduce my molecule in aminoacids.rtp file, that I did it, my problem is I have 4 repetitive structures (Ligands) and 2 metals, the whole charge of molecule is zero but every one of

Re: [gmx-users] problem with introducing a new structure in gromacs, please help if anybody knows

2018-12-10 Thread Dallas Warren
The overall charge for an entire molecule has to be an integer value, anything other than that is physically impossible. So you have to fix your charges so that is the case, and you must have done something wrong where you pull/calculated the charges. Catch ya, Dr. Dallas Warren Drug Delivery, D