Re: [gmx-users] sasa question

2019-04-09 Thread Mala L Radhakrishnan
thank you! On Tue, Apr 9, 2019 at 11:33 AM Justin Lemkul wrote: > > > On 4/1/19 8:21 AM, Mala L Radhakrishnan wrote: > > Hi all, > > > > I wanted to double check something which I believe is true based on doing > > my own tests, but -- > > > > When I use gmx sasa to calculate the SASA of a group

Re: [gmx-users] sasa question

2019-04-09 Thread Justin Lemkul
On 4/1/19 8:21 AM, Mala L Radhakrishnan wrote: Hi all, I wanted to double check something which I believe is true based on doing my own tests, but -- When I use gmx sasa to calculate the SASA of a group within a larger system (by selecting the number corresponding to that group from the inte

[gmx-users] sasa question

2019-04-01 Thread Mala L Radhakrishnan
Hi all, I wanted to double check something which I believe is true based on doing my own tests, but -- When I use gmx sasa to calculate the SASA of a group within a larger system (by selecting the number corresponding to that group from the interactive menu upon running), it will output the SASA

[gmx-users] SASA question

2015-11-14 Thread Tom
Dear All, I am calculating SASA of a gold surface which is PBC bonded with image atoms. My surface is around 12*12 nm and the thickness is 1 nm. Why g_sas gives the value of the surface is 12*nm^2 close to the single-surface-face area? I copied the VDW radii in the current directory. Thanks for