Re: [gmx-users] short-range eletrostatic energy of every aminoacid

2015-05-25 Thread Ullmann, Thomas
annt -- From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se [gromacs.org_gmx-users-boun...@maillist.sys.kth.se] on behalf of Diogo Martins de Sá [sadi...@mol.bio.br] Sent: Monday, May 25, 2015 8:38 PM To: gmx-users Subject: [gmx-users] short-range eletrostatic en

[gmx-users] short-range eletrostatic energy of every aminoacid

2015-05-25 Thread Diogo Martins de Sá
Hello guys, I'd like to do make an energy matrix of every aminoacid of a simulation of two interacting proteins. I know enemat can assess the matrix, but for this I have to define energygroups in .mdp files. What would be the easiest way to achieve this? I guess if I am going to find an easier w

[gmx-users] short-range eletrostatic energy of every aminoacid

2015-05-25 Thread Diogo Martins de Sá
Hello guys, I'd like to do make an energy matrix of every aminoacid of a simulation of two interacting proteins. I know enemat can assess the matrix, but for this I have to define energygroups in .mdp files. What would be the easiest way to achieve this? Thanks in advance. Regards, Diogo --