Re: [gmx-users] temperature variation of all-atom CHARMM force fields

2015-07-02 Thread Mark Abraham
Hi, You could also observe the change in e.g. free-energy of solvation of that ion in that force field upon change in temperature. Or maybe something even more relevant? Mark On Thu, Jul 2, 2015 at 5:29 PM Justin Lemkul jalem...@vt.edu wrote: On 7/2/15 10:33 AM, soumadwip ghosh wrote: Hi,

[gmx-users] temperature variation of all-atom CHARMM force fields

2015-07-02 Thread soumadwip ghosh
Hi, I am stuck with one of the reviews of my paper where i have investigated the thermodynamics of small molecular ion binding to DNA duplex using CHARMM 27 force field. In order to do so I calculated the PMF of the binding processes at different temperature ( 300, 270 and 330K) and then

Re: [gmx-users] temperature variation of all-atom CHARMM force fields

2015-07-02 Thread Justin Lemkul
On 7/2/15 10:33 AM, soumadwip ghosh wrote: Hi, I am stuck with one of the reviews of my paper where i have investigated the thermodynamics of small molecular ion binding to DNA duplex using CHARMM 27 force field. In order to do so I calculated the PMF of the binding processes at different