Re: [gmx-users] walls with slab of water

2018-02-26 Thread Jochen Hub
Hi, I would use a flat-bottomed position restraint in Z-direction for this purpose, see the Gromacs manual. Cheers, Jochen Am 25.02.18 um 10:17 schrieb Adriano Santana Sanchez: Hi, I am trying to run a SLAB of water with a solute and I want to put a wall on the z axis edge. My problem is

[gmx-users] walls with slab of water

2018-02-25 Thread Adriano Santana Sanchez
Hi, I am trying to run a SLAB of water with a solute and I want to put a wall on the z axis edge. My problem is how to define *wall_atomtype *in the topology file or in the .itp I am using oplsaa.ff force field with SPC/E water. This is a section of the .mpd: Neighborsearching and short-range