Re: [gmx-users] xtc with perl

2017-06-30 Thread gromacs query
Thanks Mark. I was just avoiding recoding my long perl analysis script to mdanalysis/pycpptraj format. Now I think there is no escape :) J On Fri, Jun 30, 2017 at 12:52 PM, Mark Abraham wrote: > Hi, > > I suggest using python projects like mdanalysis or cpptraj, which read xtc > files, or usin

Re: [gmx-users] xtc with perl

2017-06-30 Thread Mark Abraham
Hi, I suggest using python projects like mdanalysis or cpptraj, which read xtc files, or using the GROMACS C++ analysis tools template, rather than wasting time writing your own code to read them. If you really must, then you should wrap this library http://www.gromacs.org/Developer_Zone/Programmi

[gmx-users] xtc with perl

2017-06-30 Thread gromacs query
Hi all, I would like my perl script to analyse xtc trajectory file directly instead of analysing human readable extracted frame files (pdb/gro etc.) to save disk space. I could not find much on mailing list but there was a brief reference about using Swig which I could not understand how to start