Hey Victor,
check http://manual.gromacs.org/current/programs/gmx-trjconv.html you probably
need -ur and -pbc
Cheers,
Max
On Jun 1, 2015, at 1:45 PM, Victor Ma
mailto:victordsmag...@gmail.com>> wrote:
Hello Justin,
Thanks a lot for the quick response. So I first load the .gro file from the
p
Hello Justin,
Thanks a lot for the quick response. So I first load the .gro file from the
previous step which is my initial coordinate file, I then loaded the .trr
file. But I am getting some wired image. Please see attachment. Thank you.
Victor
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On 6/1/15 12:07 PM, Victor Ma wrote:
hello Gromacs community,
I have a quite embarrassing question to ask. I couldn't find a way to
visualize my gromacs trajectory in VMD. There are no tutorial online. By
nature, VMD does not recognize Gromacs toplogy file. I see that on
Gromacs's website ther
