01/01: doc: Update the package count.

2017-03-10 Thread John Darrington
jmd pushed a commit to branch master in repository guix. commit 4018745a224fd108e08e4d88d443130cc4c86bcc Author: John Darrington Date: Fri Mar 10 06:43:08 2017 +0100 doc: Update the package count. * doc/guix.texi: Update the number of packages available. ---

branch master updated (c84c8f6 -> 4018745)

2017-03-10 Thread John Darrington
jmd pushed a change to branch master in repository guix. from c84c8f6 gnu: wget: Fix CVE-2017-6508. new 4018745 doc: Update the package count. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions

branch master updated (e08ad76 -> c84c8f6)

2017-03-10 Thread Leo Famulari
lfam pushed a change to branch master in repository guix. from e08ad76 gnu: Add r-fnn. new c84c8f6 gnu: wget: Fix CVE-2017-6508. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds"

01/01: gnu: wget: Fix CVE-2017-6508.

2017-03-10 Thread Leo Famulari
lfam pushed a commit to branch master in repository guix. commit c84c8f66f54a508fbe5ba1831e3595794dc78eb2 Author: Leo Famulari Date: Fri Mar 10 22:35:50 2017 -0500 gnu: wget: Fix CVE-2017-6508. * gnu/packages/patches/wget-CVE-2017-6508.patch: New file. *

03/04: gnu: Add r-pbapply.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit 7711f614502948274ceaf1c7547d8abe40b81c9b Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 11:50:25 2017 +1000 gnu: Add r-pbapply. * gnu/packages/statistics.scm (r-pbapply): New

branch master updated (036cd0c -> e08ad76)

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a change to branch master in repository guix. from 036cd0c gnu: Add r-ape. new fbf45d6 gnu: vsearch: Update to 2.4.2. new d4cebae gnu: Add r-vgam. new 7711f61 gnu: Add r-pbapply. new e08ad76 gnu: Add r-fnn. The 4 revisions

04/04: gnu: Add r-fnn.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit e08ad76658f0bd1b9880c2388ae004ff0daca1cb Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 11:55:28 2017 +1000 gnu: Add r-fnn. * gnu/packages/statistics.scm (r-fnn): New variable.

01/04: gnu: vsearch: Update to 2.4.2.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit fbf45d6ea7c038b5c1a718b9b927fd64af8c5a54 Author: Ben Woodcroft Date: Sat Mar 11 11:37:15 2017 +1000 gnu: vsearch: Update to 2.4.2. * gnu/packages/bioinformatics.scm (vsearch): Update

02/04: gnu: Add r-vgam.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit d4cebae286fec90deae7c0cb829c8d57218c63fc Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 11:47:02 2017 +1000 gnu: Add r-vgam. * gnu/packages/statistics.scm (r-vgam): New variable.

07/10: gnu: Add r-robustbase.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit c0cab38e037e67e3b9c784270b846687b749b27f Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 09:56:57 2017 +1000 gnu: Add r-robustbase. * gnu/packages/statistics.scm (r-robustbase):

05/10: gnu: Add r-prabclus.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit c962816dc4e009da8cbe8006a80f4a7f73d7bdbe Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 09:36:49 2017 +1000 gnu: Add r-prabclus. * gnu/packages/statistics.scm (r-prabclus): New

09/10: gnu: Add r-fpc.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit a409e8b52f76c0eaab381bf05136e63455c00b00 Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 10:10:36 2017 +1000 gnu: Add r-fpc. * gnu/packages/statistics.scm (r-fpc): New variable.

04/10: gnu: Add r-mclust.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit 5638e154757454bab34b5391a0b07f17a9db4573 Author: Raoul Jean Pierre Bonnal Date: Thu Jan 19 19:55:04 2017 +0100 gnu: Add r-mclust. * gnu/packages/statistics.scm (r-mclust): New

branch master updated (a2fa9c3 -> 036cd0c)

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a change to branch master in repository guix. from a2fa9c3 gnu: Add obnam. new d5eca4f gnu: Add r-diptest. new 1721fb4 gnu: Add r-modeltools. new a1f2668 gnu: Add r-flexmix. new 5638e15 gnu: Add r-mclust. new c962816

10/10: gnu: Add r-ape.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit 036cd0cb8b7af877841d08364bf30788a313af48 Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 10:32:14 2017 +1000 gnu: Add r-ape. * gnu/packages/bioinformatics.scm (r-ape): New

08/10: gnu: Add r-trimcluster.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit 5da4f84f1faa1caf9b1dbe599f53016acfcb4ff9 Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 10:04:33 2017 +1000 gnu: Add r-trimcluster. * gnu/packages/statistics.scm (r-trimcluster):

03/10: gnu: Add r-flexmix.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit a1f2668e6c0e3545ee2272edcab1a8db9d43b489 Author: Raoul Jean Pierre Bonnal Date: Thu Jan 19 19:55:03 2017 +0100 gnu: Add r-flexmix. * gnu/packages/statistics.scm (r-flexmix): New

02/10: gnu: Add r-modeltools.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit 1721fb4fe79eecc8061c7bcdfe45c3503627587f Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 09:06:55 2017 +1000 gnu: Add r-modeltools. * gnu/packages/statistics.scm (r-modeltools):

06/10: gnu: Add r-deoptimr.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit cda0720805b31c6fd2e3d0b6ffa0a4294429428f Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 09:45:34 2017 +1000 gnu: Add r-deoptimr. * gnu/packages/statistics.scm (r-deoptimr): New

01/10: gnu: Add r-diptest.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit d5eca4f9ac8d7000e53136379def8ce6ec561718 Author: Raoul Jean Pierre Bonnal Date: Sat Mar 11 07:34:57 2017 +1000 gnu: Add r-diptest. * gnu/packages/statistics.scm (r-diptest): New

branch master updated (b500dc2 -> a2fa9c3)

2017-03-10 Thread Marius Bakke
mbakke pushed a change to branch master in repository guix. from b500dc2 gnu: icestorm: Replace reference in icebox_vlog. new a2fa9c3 gnu: Add obnam. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/01: gnu: Add obnam.

2017-03-10 Thread Marius Bakke
mbakke pushed a commit to branch master in repository guix. commit a2fa9c3d1baf65cc5aec2ce843e2d7921e593c21 Author: Arun Isaac Date: Thu Mar 9 22:57:42 2017 +0530 gnu: Add obnam. * gnu/packages/backup.scm (obnam): New variable. Signed-off-by:

01/01: gnu: icestorm: Replace reference in icebox_vlog.

2017-03-10 Thread Danny Milosavljevic
dannym pushed a commit to branch master in repository guix. commit b500dc2e83adc5529b890349af48655d0adaf1f8 Author: Theodoros Foradis Date: Sat Jan 14 20:31:34 2017 +0200 gnu: icestorm: Replace reference in icebox_vlog. * gnu/packages/fpga.scm

branch master updated (97bede8 -> b500dc2)

2017-03-10 Thread Danny Milosavljevic
dannym pushed a change to branch master in repository guix. from 97bede8 gnu: dub: Update to 1.2.2. new b500dc2 gnu: icestorm: Replace reference in icebox_vlog. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails.

01/01: gnu: dub: Update to 1.2.2.

2017-03-10 Thread Danny Milosavljevic
dannym pushed a commit to branch master in repository guix. commit 97bede8466b587099d5fdd4640483e82328bbd8d Author: Danny Milosavljevic Date: Fri Mar 10 19:39:52 2017 +0100 gnu: dub: Update to 1.2.2. * gnu/packages/ldc.scm (dub): Update to 1.2.2. ---

branch master updated (f895dce -> 97bede8)

2017-03-10 Thread Danny Milosavljevic
dannym pushed a change to branch master in repository guix. from f895dce services: openssh: Fix 'PrintLastLog' default behaviour. new 97bede8 gnu: dub: Update to 1.2.2. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate

branch master updated (856be82 -> f895dce)

2017-03-10 Thread Danny Milosavljevic
dannym pushed a change to branch master in repository guix. from 856be82 system: Avoid '_' as a pattern variable in 'match'. new 563c5d4 services: openssh: Enable PAM. new 1806a67 services: openssh: Remove deprecated options. new f895dce services: openssh:

02/03: services: openssh: Remove deprecated options.

2017-03-10 Thread Danny Milosavljevic
dannym pushed a commit to branch master in repository guix. commit 1806a670f06bd745e7e3744046f50bb6f9113d26 Author: Clément Lassieur Date: Thu Mar 2 22:06:28 2017 +0100 services: openssh: Remove deprecated options. * gnu/services/ssh.scm

03/03: services: openssh: Fix 'PrintLastLog' default behaviour.

2017-03-10 Thread Danny Milosavljevic
dannym pushed a commit to branch master in repository guix. commit f895dce41b5495849a7e26fef747db14f6dd4ef0 Author: Clément Lassieur Date: Thu Mar 2 22:06:29 2017 +0100 services: openssh: Fix 'PrintLastLog' default behaviour. * gnu/services/ssh.scm

01/03: services: openssh: Enable PAM.

2017-03-10 Thread Danny Milosavljevic
dannym pushed a commit to branch master in repository guix. commit 563c5d42c954eacc54151d46a04ae14b9dbb1a10 Author: Clément Lassieur Date: Thu Mar 2 22:06:27 2017 +0100 services: openssh: Enable PAM. * gnu/services/ssh.scm: (openssh-pam-services): New

branch master updated (dcf6e3e -> e5854ab)

2017-03-10 Thread Ludovic Court�s
civodul pushed a change to branch master in repository guix-artwork. from dcf6e3e website: Provide https links for alpha.gnu.org URLs. new e5854ab website: gsoc: Fix anchor. The 1 revisions listed above as "new" are entirely new to this repository and will be described in

01/01: website: gsoc: Fix anchor.

2017-03-10 Thread Ludovic Court�s
civodul pushed a commit to branch master in repository guix-artwork. commit e5854abdd050ed93c0c8d429d14ab8954a5be602 Author: Ludovic Courtès Date: Fri Mar 10 16:55:56 2017 +0100 website: gsoc: Fix anchor. * website/posts/join-gnu-guix-for-gsoc-2017.md: Fix anchor

branch master updated (79f09fa -> 856be82)

2017-03-10 Thread Ludovic Court�s
civodul pushed a change to branch master in repository guix. from 79f09fa gnu: hmmer: Build reproducibly. new 82ccc49 services: Add exim-service-type. new fe2b643 services: Create /var/log upon activation. new 856be82 system: Avoid '_' as a pattern variable

01/03: services: Add exim-service-type.

2017-03-10 Thread Ludovic Court�s
civodul pushed a commit to branch master in repository guix. commit 82ccc499f7262982beb2da9827d5706967a334f0 Author: Carlo Zancanaro Date: Sun Feb 19 10:32:58 2017 +1100 services: Add exim-service-type. * gnu/services/mail.scm (): New record type.

02/03: services: Create /var/log upon activation.

2017-03-10 Thread Ludovic Court�s
civodul pushed a commit to branch master in repository guix. commit fe2b6434f02c8abb26aebb59c4e0d0ccacb4fc90 Author: Christopher Baines Date: Thu Feb 23 08:20:57 2017 + services: Create /var/log upon activation. When launching a container created with guix

03/03: system: Avoid '_' as a pattern variable in 'match'.

2017-03-10 Thread Ludovic Court�s
civodul pushed a commit to branch master in repository guix. commit 856be823235d488bf5d580b0b0340ec93d042e28 Author: Ludovic Courtès Date: Fri Mar 10 14:41:00 2017 +0100 system: Avoid '_' as a pattern variable in 'match'. * gnu/system.scm

branch master updated (5ded35d -> 79f09fa)

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a change to branch master in repository guix. from 5ded35d gnu: Add sambamba. new 79f09fa gnu: hmmer: Build reproducibly. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions

01/01: gnu: hmmer: Build reproducibly.

2017-03-10 Thread Ben Woodcroft
benwoodcroft pushed a commit to branch master in repository guix. commit 79f09fa2394c5de06668406222a655eac39c36f6 Author: Ben J. Woodcroft Date: Fri Mar 10 20:25:00 2017 +1000 gnu: hmmer: Build reproducibly. * gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.

branch master updated (fc1428d -> 5ded35d)

2017-03-10 Thread Ricardo Wurmus
rekado pushed a change to branch master in repository guix. from fc1428d gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640]. new 5ded35d gnu: Add sambamba. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

01/01: gnu: Add sambamba.

2017-03-10 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 5ded35d89d33a58294956c4a6c86cfb2fc7c7924 Author: Ricardo Wurmus Date: Mon Mar 6 12:17:49 2017 +0100 gnu: Add sambamba. * gnu/packages/bioinformatics.scm (htslib-for-sambamba,