01/01: gnu: Add r-bookdown.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 2abfc5b8279e07f9adbe30a55aacde99420a8c66 Author: Roel Janssen Date: Fri Apr 28 10:09:31 2017 +0200 gnu: Add r-bookdown. * gnu/packages/bioinformatics.scm (r-bookdown): New variable. --- gnu/packages/bioinformatics.

branch master updated (833361a -> 2abfc5b)

2017-04-28 Thread Roel Janssen
roelj pushed a change to branch master in repository guix. from 833361a gnu: linux-libre: Update to 4.10.13. new 2abfc5b gnu: Add r-bookdown. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions liste

01/01: gnu: Add r-delayedarray.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 71e34e6b5bac626aa57874b2ba55ba1ce48c53c9 Author: Roel Janssen Date: Fri Apr 28 10:15:12 2017 +0200 gnu: Add r-delayedarray. * gnu/packages/bioinformatics.scm (r-delayedarray): New variable. --- gnu/packages/bioinfo

branch master updated (2abfc5b -> 71e34e6)

2017-04-28 Thread Roel Janssen
roelj pushed a change to branch master in repository guix. from 2abfc5b gnu: Add r-bookdown. new 71e34e6 gnu: Add r-delayedarray. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds"

branch master updated (71e34e6 -> ffef27f)

2017-04-28 Thread Roel Janssen
roelj pushed a change to branch master in repository guix. from 71e34e6 gnu: Add r-delayedarray. new ffef27f gnu: Add r-genomeinfodbdata. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as

01/01: gnu: Add r-genomeinfodbdata.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit ffef27f3d249d3ecb46931073ef94f5c6029d500 Author: Roel Janssen Date: Fri Apr 28 10:17:06 2017 +0200 gnu: Add r-genomeinfodbdata. * gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable. --- gnu/packages

01/01: import: Update Bioconductor release to 3.5.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 7c3e4660a5a2d700859603c5b1691f1abb28e284 Author: Roel Janssen Date: Fri Apr 28 11:02:26 2017 +0200 import: Update Bioconductor release to 3.5. * guix/import/cran.scm: Change Bioconductor release to 3.5. --- guix/im

branch master updated (ffef27f -> 7c3e466)

2017-04-28 Thread Roel Janssen
roelj pushed a change to branch master in repository guix. from ffef27f gnu: Add r-genomeinfodbdata. new 7c3e466 import: Update Bioconductor release to 3.5. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The

28/63: gnu: r-annotationdbi: Update to 1.38.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit aafaab22d348e18d4aff172ab10d6647cdcbbb77 Author: Roel Janssen Date: Fri Apr 28 10:40:44 2017 +0200 gnu: r-annotationdbi: Update to 1.38.0. * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.0. ---

11/63: gnu: r-systempiper: Update to 1.10.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 026dc7e4fc7e853d8c52a08fb4f0f06c98565f62 Author: Roel Janssen Date: Fri Apr 28 10:31:50 2017 +0200 gnu: r-systempiper: Update to 1.10.0. * gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0. --- gnu/

34/63: gnu: r-genomicalignments: Update to 1.12.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 5f16d1e47dea251f9234574504967a72932d7c91 Author: Roel Janssen Date: Fri Apr 28 10:43:21 2017 +0200 gnu: r-genomicalignments: Update to 1.12.0. * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.

18/63: gnu: r-dnacopy: Update to 1.50.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 9b02d49cb0960ff9fdba403cc0ca40aa351bc66b Author: Roel Janssen Date: Fri Apr 28 10:36:24 2017 +0200 gnu: r-dnacopy: Update to 1.50.0. * gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.0. --- gnu/packages

22/63: gnu: r-edger: Update to 3.18.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 00ffd55fa1ebbed456c685f9dd3b71bf1c9d5ce1 Author: Roel Janssen Date: Fri Apr 28 10:38:44 2017 +0200 gnu: r-edger: Update to 3.18.0. * gnu/packages/bioinformatics.scm (r-edger): Update to 3.18.0. --- gnu/packages/bio

33/63: gnu: r-summarizedexperiment: Update to 1.6.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit d006ee31af9390bc8f9b186e4327095b0b60e43c Author: Roel Janssen Date: Fri Apr 28 10:42:25 2017 +0200 gnu: r-summarizedexperiment: Update to 1.6.0. * gnu/packages/bioinformatics.scm (r-summarizedexperiment): [sourc

branch master updated (7c3e466 -> 4646a79)

2017-04-28 Thread Roel Janssen
roelj pushed a change to branch master in repository guix. from 7c3e466 import: Update Bioconductor release to 3.5. new dbab99b gnu: r-annotate: Update to 1.54.0. new 97a50e4 gnu: r-geneplotter: Update to 1.54.0. new b5bc3a3 gnu: r-genefilter: Update to 1.58.

55/63: gnu: r-mzr: Update to 2.10.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit e440ad6d4fd5ecce61d2bf10e580aac8303d7db6 Author: Roel Janssen Date: Fri Apr 28 10:50:54 2017 +0200 gnu: r-mzr: Update to 2.10.0. * gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0. --- gnu/packages/bioinfo

29/63: gnu: r-biomart: Update to 2.32.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 78e7a589c99d581e3aaa49262bc815f53d37ccbc Author: Roel Janssen Date: Fri Apr 28 10:41:07 2017 +0200 gnu: r-biomart: Update to 2.32.0. * gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.0. --- gnu/packages

09/63: gnu: r-gostats: Update to 2.42.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 9511773423690f8a0fd063e50845094b2e2aebb4 Author: Roel Janssen Date: Fri Apr 28 10:31:05 2017 +0200 gnu: r-gostats: Update to 2.42.0. * gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0. --- gnu/packages

05/63: gnu: r-annotationforge: Update to 1.18.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 46972a4427ab2996707fb79cfb02199ec89f7767 Author: Roel Janssen Date: Fri Apr 28 10:29:20 2017 +0200 gnu: r-annotationforge: Update to 1.18.0. * gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0. -

25/63: gnu: r-xvector: Update to 0.16.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 17a02f5149afe8c9f1528cd1ccea0180eff7cc72 Author: Roel Janssen Date: Fri Apr 28 10:39:42 2017 +0200 gnu: r-xvector: Update to 0.16.0. * gnu/packages/bioinformatics.scm (r-xvector): Update to 0.16.0. --- gnu/packages

06/63: gnu: r-rbgl: Update to 1.52.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 8ab6f241ea282900a235314a331e6afce1aeb9fa Author: Roel Janssen Date: Fri Apr 28 10:29:48 2017 +0200 gnu: r-rbgl: Update to 1.52.0. * gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0. --- gnu/packages/bioin

36/63: gnu: r-genomicfeatures: Update to 1.28.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 5d0301a33984097795c59b953050e3de6e9cb534 Author: Roel Janssen Date: Fri Apr 28 10:43:58 2017 +0200 gnu: r-genomicfeatures: Update to 1.28.0. * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.0. -

38/63: gnu: r-topgo: Update to 2.28.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 6e70b6d63cc186ae71e0e2e504d4e26b0d6927b3 Author: Roel Janssen Date: Fri Apr 28 10:44:32 2017 +0200 gnu: r-topgo: Update to 2.28.0. * gnu/packages/bioinformatics.scm (r-topgo): Update to 2.28.0. --- gnu/packages/bio

13/63: gnu: r-biocgenerics: Update to 0.22.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 28a5b3f2c6ffe22d74c4010ecd24e6d13ccdff52 Author: Roel Janssen Date: Fri Apr 28 10:32:37 2017 +0200 gnu: r-biocgenerics: Update to 0.22.0. * gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0. --- gn

02/63: gnu: r-geneplotter: Update to 1.54.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 97a50e4f346b42d689064de67754e98ac61458a0 Author: Roel Janssen Date: Fri Apr 28 10:27:29 2017 +0200 gnu: r-geneplotter: Update to 1.54.0. * gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0. --- gnu/

37/63: gnu: r-graph: Update to 1.54.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 56373771b30d93c53e117e76c81f594a39c0a370 Author: Roel Janssen Date: Fri Apr 28 10:44:14 2017 +0200 gnu: r-graph: Update to 1.54.0. * gnu/packages/bioinformatics.scm (r-graph): Update to 1.54.0. --- gnu/packages/bio

10/63: gnu: r-shortread: Update to 1.34.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 34c276f7612ecbe0cdf1c8f0b24ec435fa7bc542 Author: Roel Janssen Date: Fri Apr 28 10:31:29 2017 +0200 gnu: r-shortread: Update to 1.34.0. * gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0. --- gnu/pack

24/63: gnu: r-limma: Update to 3.32.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit abf5a14e1170bd3c942dbefcafda3f50f870e459 Author: Roel Janssen Date: Fri Apr 28 10:39:25 2017 +0200 gnu: r-limma: Update to 3.32.0. * gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.0. --- gnu/packages/bio

04/63: gnu: r-deseq2: Update to 1.16.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 3ae74e451c33875cd1e8391122f1094c8eb6a73c Author: Roel Janssen Date: Fri Apr 28 10:28:44 2017 +0200 gnu: r-deseq2: Update to 1.16.0. * gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0. --- gnu/packages/b

03/63: gnu: r-genefilter: Update to 1.58.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit b5bc3a396324d32429b2689e8ff9f4f75ee56bfd Author: Roel Janssen Date: Fri Apr 28 10:28:10 2017 +0200 gnu: r-genefilter: Update to 1.58.0. * gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0. --- gnu/pa

26/63: gnu: r-genomicranges: Update to 1.28.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 1859712bef43b73f058c97c9c8fdfb36c48a144f Author: Roel Janssen Date: Fri Apr 28 10:40:00 2017 +0200 gnu: r-genomicranges: Update to 1.28.0. * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.0. ---

01/63: gnu: r-annotate: Update to 1.54.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit dbab99b6d2cdf684881dbe544f775328fb255e7e Author: Roel Janssen Date: Fri Apr 28 10:26:57 2017 +0200 gnu: r-annotate: Update to 1.54.0. * gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0. --- gnu/packag

19/63: gnu: r-s4vectors: Update to 0.14.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit f1f380185b1a8b0795b145a53ce262257ddf6706 Author: Roel Janssen Date: Fri Apr 28 10:36:50 2017 +0200 gnu: r-s4vectors: Update to 0.14.0. * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.0. --- gnu/pack

39/63: gnu: r-bsgenome: Update to 1.44.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit c54a702a28c7365cc90e3c72fc04008cd54206bc Author: Roel Janssen Date: Fri Apr 28 10:44:51 2017 +0200 gnu: r-bsgenome: Update to 1.44.0. * gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.44.0. --- gnu/packag

23/63: gnu: r-variantannotation: Update to 1.22.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit d2d7af98329fde823aa6578e598bf62e0e9391df Author: Roel Janssen Date: Fri Apr 28 10:39:04 2017 +0200 gnu: r-variantannotation: Update to 1.22.0. * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.

46/63: gnu: r-rhtslib: Update to 1.8.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 37631ddc286d6879890431e309922e0f51e7341d Author: Roel Janssen Date: Fri Apr 28 10:46:55 2017 +0200 gnu: r-rhtslib: Update to 1.8.0. * gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0. --- gnu/packages/b

30/63: gnu: r-biocparallel: Update to 1.10.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 502da6ffc7a8a0a83c4702b847d2a1a8b1e444d0 Author: Roel Janssen Date: Fri Apr 28 10:41:25 2017 +0200 gnu: r-biocparallel: Update to 1.10.0. * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.0. --- gn

45/63: gnu: r-zlibbioc: Update to 1.22.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 8444f6067a570e4f3781995fdb92e67d50ce49fd Author: Roel Janssen Date: Fri Apr 28 10:46:38 2017 +0200 gnu: r-zlibbioc: Update to 1.22.0. * gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0. --- gnu/packag

07/63: gnu: r-gseabase: Update to 1.38.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit c584a07ffd85aa24de0cc645fec15ca3b722a010 Author: Roel Janssen Date: Fri Apr 28 10:30:20 2017 +0200 gnu: r-gseabase: Update to 1.38.0. * gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0. --- gnu/packag

35/63: gnu: r-rtracklayer: Update to 1.36.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 2ea7155b04ef809fc49eedfc51ccbdda776350e4 Author: Roel Janssen Date: Fri Apr 28 10:43:40 2017 +0200 gnu: r-rtracklayer: Update to 1.36.0. * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.0. --- gnu/

32/63: gnu: r-rsamtools: Update to 1.28.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 6bf5543be8079d28b1ea7a868706aee07a8c4c3d Author: Roel Janssen Date: Fri Apr 28 10:42:01 2017 +0200 gnu: r-rsamtools: Update to 1.28.0. * gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.28.0. --- gnu/pack

44/63: gnu: r-motifrg: Update to 1.20.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit a7b90ea990b7eeef921de5c038ed6ed7438a7f89 Author: Roel Janssen Date: Fri Apr 28 10:46:18 2017 +0200 gnu: r-motifrg: Update to 1.20.0. * gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.20.0. --- gnu/packages

21/63: gnu: r-genomeinfodb: Update to 1.12.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 38b99ccc578da7afff80f85c55f2cb749f5e67d6 Author: Roel Janssen Date: Fri Apr 28 10:37:42 2017 +0200 gnu: r-genomeinfodb: Update to 1.12.0. * gnu/packages/bioinformatics.scm (r-genomeinfodb): [source] Update to 1.12.

53/63: gnu: r-sva: Update to 3.24.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 1d09d017db3b6d95139f56fabaf76af5994ad3af Author: Roel Janssen Date: Fri Apr 28 10:50:23 2017 +0200 gnu: r-sva: Update to 3.24.0. * gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0. --- gnu/packages/bioinfo

47/63: gnu: r-bamsignals: Update to 1.8.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit ccd2aade9888030346a1f76c0ada6dc6c1a37d34 Author: Roel Janssen Date: Fri Apr 28 10:47:10 2017 +0200 gnu: r-bamsignals: Update to 1.8.0. * gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0. --- gnu/pack

50/63: gnu: r-rhdf5: Update to 2.20.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 04049a5f2c2a87abaa66c8d38043591b9449711c Author: Roel Janssen Date: Fri Apr 28 10:49:16 2017 +0200 gnu: r-rhdf5: Update to 2.20.0. * gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0. --- gnu/packages/bio

60/63: gnu: r-pcamethods: Update to 1.68.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 5bfa6e090d83db9b8cfcfab0daaa8ae7b8dd658e Author: Roel Janssen Date: Fri Apr 28 10:53:01 2017 +0200 gnu: r-pcamethods: Update to 1.68.0. * gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0. --- gnu/pa

43/63: gnu: r-seqlogo: Update to 1.42.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 0fce7d9be556e5cea3dbda5d74eacfd7620cd6fb Author: Roel Janssen Date: Fri Apr 28 10:45:59 2017 +0200 gnu: r-seqlogo: Update to 1.42.0. * gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.42.0. --- gnu/packages

12/63: gnu: r-grohmm: Update to 1.10.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 795a604526286e943dda7038aed57d341013024a Author: Roel Janssen Date: Fri Apr 28 10:32:10 2017 +0200 gnu: r-grohmm: Update to 1.10.0. * gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0. --- gnu/packages/b

08/63: gnu: r-category: Update to 2.42.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit ca0289aee74ead3b9f4d36758ec717bd07b8f05d Author: Roel Janssen Date: Fri Apr 28 10:30:44 2017 +0200 gnu: r-category: Update to 2.42.0. * gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0. --- gnu/packag

27/63: gnu: r-biobase: Update to 2.36.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit b2fff403c811ac0fedfe458cc90795042d7dfb08 Author: Roel Janssen Date: Fri Apr 28 10:40:19 2017 +0200 gnu: r-biobase: Update to 2.36.0. * gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.0. --- gnu/packages

14/63: gnu: r-biocinstaller: Update to 1.26.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 3bef15286af234a51211e4f273f6a7905a092cb9 Author: Roel Janssen Date: Fri Apr 28 10:32:58 2017 +0200 gnu: r-biocinstaller: Update to 1.26.0. * gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0. ---

15/63: gnu: r-biocviews: Update to 1.44.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 68eac34974c1968653c13d14b86db26b6bf46505 Author: Roel Janssen Date: Fri Apr 28 10:33:26 2017 +0200 gnu: r-biocviews: Update to 1.44.0. * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0. --- gnu/pack

40/63: gnu: r-impute: Update to 1.50.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 5999359f568dbf7ce3b3908565a0bafde103cba3 Author: Roel Janssen Date: Fri Apr 28 10:45:10 2017 +0200 gnu: r-impute: Update to 1.50.0. * gnu/packages/bioinformatics.scm (r-impute): Update to 1.50.0. --- gnu/packages/b

52/63: gnu: r-copywriter: Update to 2.8.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit d52d2d623a73c71c4b5c629839605f1a355d9a7c Author: Roel Janssen Date: Fri Apr 28 10:50:06 2017 +0200 gnu: r-copywriter: Update to 2.8.0. * gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0. --- gnu/pack

61/63: gnu: r-msnbase: Update to 2.2.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 82359c72cb4489f9b68768271d64d7b81891470e Author: Roel Janssen Date: Fri Apr 28 10:53:17 2017 +0200 gnu: r-msnbase: Update to 2.2.0. * gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0. --- gnu/packages/b

58/63: gnu: r-vsn: Update to 3.44.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 60c08b2ff431e09a3c7d10dc5c4f416064d9676f Author: Roel Janssen Date: Fri Apr 28 10:51:53 2017 +0200 gnu: r-vsn: Update to 3.44.0. * gnu/packages/bioinformatics.scm (r-vsn): [source]: Update to 3.44.0, [propag

57/63: gnu: r-affy: Update to 1.54.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit bd3cc4cc52a0e75227cd51f34d01d64301cee2ca Author: Roel Janssen Date: Fri Apr 28 10:51:32 2017 +0200 gnu: r-affy: Update to 1.54.0. * gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0. --- gnu/packages/bioin

42/63: gnu: r-genomation: Update to 1.8.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 3ae82c8dfed5f00c6bf9d5d39b927012426793be Author: Roel Janssen Date: Fri Apr 28 10:45:43 2017 +0200 gnu: r-genomation: Update to 1.8.0. * gnu/packages/bioinformatics.scm (r-genomation): Update to 1.8.0. --- gnu/pack

63/63: gnu: r-preprocesscore: Update to 1.38.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 4646a79c651b30e0b9e28ab6d58925c21d2722a4 Author: Roel Janssen Date: Fri Apr 28 10:53:56 2017 +0200 gnu: r-preprocesscore: Update to 1.38.0. * gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0. --- gn

48/63: gnu: r-mutationalpatterns: Update to 1.2.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit cf4ac4e46513cf23e0217d7ddd55ee794b824d9f Author: Roel Janssen Date: Fri Apr 28 10:47:53 2017 +0200 gnu: r-mutationalpatterns: Update to 1.2.0. * gnu/packages/bioinformatics.scm (r-mutationalpatterns): [source]:

31/63: gnu: r-biostrings: Update to 2.44.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 3ed41af6b555ae9b4b01aa9185d398791482d034 Author: Roel Janssen Date: Fri Apr 28 10:41:43 2017 +0200 gnu: r-biostrings: Update to 2.44.0. * gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.0. --- gnu/pa

20/63: gnu: r-iranges: Update to 2.10.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 7d9ab5d92017608cea1a3754748e636bca5f5b4f Author: Roel Janssen Date: Fri Apr 28 10:37:15 2017 +0200 gnu: r-iranges: Update to 2.10.0. * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.0. --- gnu/packages

56/63: gnu: r-affyio: Update to 1.46.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 71abcc4cbf3d56161540ef1b35dfaa2bd39c617d Author: Roel Janssen Date: Fri Apr 28 10:51:14 2017 +0200 gnu: r-affyio: Update to 1.46.0. * gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0. --- gnu/packages/b

16/63: gnu: r-biocstyle: Update to 2.4.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 3bef24c968fe864b502883b6d409f99dbf6ee8f6 Author: Roel Janssen Date: Fri Apr 28 10:33:54 2017 +0200 gnu: r-biocstyle: Update to 2.4.0. * gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0. [p

41/63: gnu: r-seqpattern: Update to 1.8.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 08b9224d2d69e023555b9b84506584c34c51438e Author: Roel Janssen Date: Fri Apr 28 10:45:28 2017 +0200 gnu: r-seqpattern: Update to 1.8.0. * gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.8.0. --- gnu/pack

49/63: gnu: r-tximport: Update to 1.4.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit ff58a1af98ff093a3a780f8fca9fe668965766e1 Author: Roel Janssen Date: Fri Apr 28 10:48:57 2017 +0200 gnu: r-tximport: Update to 1.4.0. * gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0. --- gnu/packages

51/63: gnu: r-chipseq: Update to 1.26.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 7d72f2a803d54ae2bf86c3476b882d87a517f77d Author: Roel Janssen Date: Fri Apr 28 10:49:47 2017 +0200 gnu: r-chipseq: Update to 1.26.0. * gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0. --- gnu/packages

62/63: gnu: r-msnid: Update to 1.10.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 524bfe2dbf4787e984196b067250480543e51a04 Author: Roel Janssen Date: Fri Apr 28 10:53:34 2017 +0200 gnu: r-msnid: Update to 1.10.0. * gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0. --- gnu/packages/bio

17/63: gnu: r-bioccheck: Update to 1.12.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 2e11beec48bd7b64e0a66e58103078d3ffad0ff6 Author: Roel Janssen Date: Fri Apr 28 10:36:02 2017 +0200 gnu: r-bioccheck: Update to 1.12.0. * gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0. --- gnu/pack

54/63: gnu: r-protgenerics: Update to 1.8.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 5b1337cc607e7773d0f786b1cea63ec347dd8c5f Author: Roel Janssen Date: Fri Apr 28 10:50:40 2017 +0200 gnu: r-protgenerics: Update to 1.8.0. * gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0. --- gnu/

59/63: gnu: r-mzid: Update to 1.14.0.

2017-04-28 Thread Roel Janssen
roelj pushed a commit to branch master in repository guix. commit 63bf2102cd4c1f2c9ce9afe5b8e77ab2ab3c797a Author: Roel Janssen Date: Fri Apr 28 10:52:43 2017 +0200 gnu: r-mzid: Update to 1.14.0. * gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0. --- gnu/packages/bioin

branch wip-potluck deleted (was ce8f7a1)

2017-04-28 Thread Andy Wingo
wingo pushed a change to branch wip-potluck in repository guix. was ce8f7a1 gnu: Add potluck host-channel service. This change permanently discards the following revisions: discards ce8f7a1 gnu: Add potluck host-channel service. discards 5e2d1da doc: Document guix potluck.

branch wip-potluck created (now eb81966)

2017-04-28 Thread Andy Wingo
wingo pushed a change to branch wip-potluck in repository guix. at eb81966 gnu: Add potluck host-channel service. This branch includes the following new commits: new 68fe9df guix: Add "potluck" packages. new 572907d guix hash: Add --git option to hash a git checkou

06/10: gnu: Add find-package-binding.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit e004f731b12e91584f9260b35d2a5fa158eb7a16 Author: Andy Wingo Date: Thu Apr 13 11:04:42 2017 +0200 gnu: Add find-package-binding. * gnu/packages.scm (find-package-binding): New export. --- gnu/packages.scm | 62

02/10: guix hash: Add --git option to hash a git checkout.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit 572907daff98a77a4215861a88b81d2f30542c09 Author: Andy Wingo Date: Mon Apr 3 21:57:24 2017 +0200 guix hash: Add --git option to hash a git checkout. * guix/scripts/hash.scm (show-help, %options): Add -g option.

05/10: potluck: Add ability to load potluck package in sandbox.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit 17815161ce62fa228acbc3604e06d7026f7f29fd Author: Andy Wingo Date: Mon Apr 24 14:05:34 2017 +0200 potluck: Add ability to load potluck package in sandbox. * guix/potluck/environment.scm: New file. * Makefile

07/10: potluck: Add ability to lower potluck package to guix package.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit 92bed28a2049b51b61298af6461f276038673464 Author: Andy Wingo Date: Mon Apr 24 14:12:01 2017 +0200 potluck: Add ability to lower potluck package to guix package. * guix/potluck/packages.scm (lower-potluck-package

03/10: guix: Add git utility module.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit 1ea716a7984de5f0835f4e03a061e50b652e98da Author: Andy Wingo Date: Mon Apr 24 14:42:09 2017 +0200 guix: Add git utility module. * guix/git.scm: New file. * Makefile.am (MODULES): Add new file. --- Makefile.

09/10: doc: Document guix potluck.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit 570a64b20700302fba2f6c0799137b54aa7497f9 Author: Andy Wingo Date: Mon Apr 24 22:44:17 2017 +0200 doc: Document guix potluck. * doc/guix.texi (potluck-package Reference): (Invoking guix potluck): New section

04/10: guix: Add "potluck" command.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit 3d3b569d638f153a8f45526e1c3334f1fd966f3d Author: Andy Wingo Date: Mon Apr 24 14:00:07 2017 +0200 guix: Add "potluck" command. * guix/scripts/potluck.scm: New file. * Makefile.am: Add new file. --- Makefile

10/10: gnu: Add potluck host-channel service.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit eb81966f4a6380446ea98f91e5cccb6746c5e242 Author: Andy Wingo Date: Thu Apr 27 10:48:28 2017 +0200 gnu: Add potluck host-channel service. * gnu/services/potluck.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODUL

01/10: guix: Add "potluck" packages.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit 68fe9df98ae9c70f362ebafd7628e17ada9b6841 Author: Andy Wingo Date: Mon Apr 24 13:59:02 2017 +0200 guix: Add "potluck" packages. * guix/potluck/build-systems.scm: * guix/potluck/licenses.scm: * guix/potlu

08/10: potluck: Add host-channel subcommand.

2017-04-28 Thread Andy Wingo
wingo pushed a commit to branch wip-potluck in repository guix. commit ce2d563e7b36f0c2585b9c319fb7d41cb5139298 Author: Andy Wingo Date: Mon Apr 24 13:54:51 2017 +0200 potluck: Add host-channel subcommand. * guix/potluck/host.scm: New file. * Makefile.am (MODULES): Add new fil

04/04: gnu: virt-manager: Update to 1.4.1.

2017-04-28 Thread ???
iyzsong pushed a commit to branch master in repository guix. commit 28172178b1667d2c29cab439677b3ea2c793aed4 Author: 宋文武 Date: Fri Apr 28 21:01:01 2017 +0800 gnu: virt-manager: Update to 1.4.1. * gnu/packages/qemu.scm (virt-manager): Update to 1.4.1. --- gnu/packages/qemu.scm | 4

branch master updated (4646a79 -> 2817217)

2017-04-28 Thread ???
iyzsong pushed a change to branch master in repository guix. from 4646a79 gnu: r-preprocesscore: Update to 1.38.0. new 52caf4b gnu: libvirt: Update to 3.2.0. new c3c0316 gnu: libvirt-glib: Update to 1.0.0. new 9271dfd gnu: python-libvirt: Update to 3.2.0.

01/04: gnu: libvirt: Update to 3.2.0.

2017-04-28 Thread ???
iyzsong pushed a commit to branch master in repository guix. commit 52caf4b9fd3d7e5ed048c522eed8785a67fe9438 Author: 宋文武 Date: Fri Apr 28 20:19:20 2017 +0800 gnu: libvirt: Update to 3.2.0. * gnu/packages/qemu.scm (libvirt): Update to 3.2.0. --- gnu/packages/qemu.scm | 4 ++-- 1 f

02/04: gnu: libvirt-glib: Update to 1.0.0.

2017-04-28 Thread ???
iyzsong pushed a commit to branch master in repository guix. commit c3c031621517444beb26c8e3a84a6621049c1731 Author: 宋文武 Date: Fri Apr 28 20:23:56 2017 +0800 gnu: libvirt-glib: Update to 1.0.0. * gnu/packages/qemu.scm (libvirt-glib): Update to 1.0.0. --- gnu/packages/qemu.scm | 4

03/04: gnu: python-libvirt: Update to 3.2.0.

2017-04-28 Thread ???
iyzsong pushed a commit to branch master in repository guix. commit 9271dfddc9989e0c27b5bff050e998af09a59b79 Author: 宋文武 Date: Fri Apr 28 20:53:15 2017 +0800 gnu: python-libvirt: Update to 3.2.0. * gnu/packages/qemu.scm (python-libvirt, python2-libvirt): Update to 3.2.0. --- gnu/

branch master updated (2817217 -> 0cb9fba)

2017-04-28 Thread David Thompson
davexunit pushed a change to branch master in repository guix. from 2817217 gnu: virt-manager: Update to 1.4.1. new 0cb9fba gnu: awscli: Add python-pyyaml input. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails.

01/01: gnu: awscli: Add python-pyyaml input.

2017-04-28 Thread David Thompson
davexunit pushed a commit to branch master in repository guix. commit 0cb9fba3dce236e3ad5b82585ec79c4d689dd939 Author: David Thompson Date: Fri Apr 28 09:20:37 2017 -0400 gnu: awscli: Add python-pyyaml input. Without this input, 'aws ec2 import-key-pair' doesn't work. * g

01/01: gnu: schismtracker: Update to 20170420.

2017-04-28 Thread Kei Kebreau
kkebreau pushed a commit to branch master in repository guix. commit 8832c9634075242ad4f0b247ceb9de297a44659c Author: Kei Kebreau Date: Fri Apr 28 11:31:47 2017 -0400 gnu: schismtracker: Update to 20170420. * gnu/packages/music.scm (schismtracker): Update to 20170420. --- gnu/pac

branch master updated (0cb9fba -> 8832c96)

2017-04-28 Thread Kei Kebreau
kkebreau pushed a change to branch master in repository guix. from 0cb9fba gnu: awscli: Add python-pyyaml input. new 8832c96 gnu: schismtracker: Update to 20170420. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate email

02/02: gnu: Add enigma.

2017-04-28 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit 162a4a03230985bbee2ee53f287459b32d1691c7 Author: Ricardo Wurmus Date: Thu Apr 27 10:42:21 2017 +0200 gnu: Add enigma. * gnu/packages/games.scm (enigma): New variable. --- gnu/packages/games.scm | 60 ++

branch master updated (8832c96 -> 162a4a0)

2017-04-28 Thread Ricardo Wurmus
rekado pushed a change to branch master in repository guix. from 8832c96 gnu: schismtracker: Update to 20170420. new d00d6ce gnu: Add xerces-c. new 162a4a0 gnu: Add enigma. The 2 revisions listed above as "new" are entirely new to this repository and will be described

01/02: gnu: Add xerces-c.

2017-04-28 Thread Ricardo Wurmus
rekado pushed a commit to branch master in repository guix. commit d00d6cea6667f70ef468f3ed011c4f280cfa3be7 Author: Ricardo Wurmus Date: Thu Apr 27 08:52:04 2017 +0200 gnu: Add xerces-c. * gnu/packages/xml.scm (xerces-c): New variable. --- gnu/packages/xml.scm | 31 ++

01/01: gnu: dbus: Update to 1.10.18.

2017-04-28 Thread Kei Kebreau
kkebreau pushed a commit to branch gnome-updates in repository guix. commit ac5c4346ebe361d12c788ea4566c6e97fc40ca15 Author: Kei Kebreau Date: Thu Apr 27 13:53:27 2017 -0400 gnu: dbus: Update to 1.10.18. * gnu/packages/glib.scm (dbus): Update to 1.10.18. --- gnu/packages/glib.scm

branch gnome-updates updated (b4a6497 -> ac5c434)

2017-04-28 Thread Kei Kebreau
kkebreau pushed a change to branch gnome-updates in repository guix. from b4a6497 gnu: harfbuzz: Update to 1.4.6. new ac5c434 gnu: dbus: Update to 1.10.18. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The r

01/01: gnu: youtube-dl: Update to 2017.04.28.

2017-04-28 Thread Arun Isaac
arunisaac pushed a commit to branch master in repository guix. commit 73749ae9f1e4f1102fe5c1824840ee6574874fd9 Author: Arun Isaac Date: Fri Apr 28 22:06:58 2017 +0530 gnu: youtube-dl: Update to 2017.04.28. * gnu/packages/video.scm (youtube-dl): Update to 2017.04.28. --- gnu/packa

branch master updated (162a4a0 -> 73749ae)

2017-04-28 Thread Arun Isaac
arunisaac pushed a change to branch master in repository guix. from 162a4a0 gnu: Add enigma. new 73749ae gnu: youtube-dl: Update to 2017.04.28. The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions lis

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