benwoodcroft pushed a change to branch staging
in repository guix.
from f80b4d2 Merge remote-tracking branch 'origin/master' into staging
new 71596c3 gnu: Adjust gemspec modifications for ruby-2.3.2.
new fdf3a68 gnu: ruby-sdoc: Update to 0.4.2.
The 2 revisions listed
benwoodcroft pushed a commit to branch staging
in repository guix.
commit 71596c3ce66ef9269c21d85f815e2f473ab6c7a1
Author: Ben Woodcroft
Date: Sat Dec 10 07:40:47 2016 +1000
gnu: Adjust gemspec modifications for ruby-2.3.2.
* gnu/packages/ruby.scm (ruby-mocha)[arguments]: Adjust
benwoodcroft pushed a change to branch master
in repository guix.
from 6b2921c gnu: linux-libre: Add fixes for CVE-2016-8655 et al.
new 7922ab8 gnu: pardre: Update to 1.1.5-1.
new a225db5 gnu: vsearch: Update to 2.3.4.
The 2 revisions listed above as "new" are entirel
benwoodcroft pushed a commit to branch master
in repository guix.
commit 7922ab8fe87154f3ccaa7daf9304632f974fbe5d
Author: Ben Woodcroft
Date: Sat Dec 10 10:31:15 2016 +1000
gnu: pardre: Update to 1.1.5-1.
* gnu/packages/bioinformatics.scm (pardre): update to 1.1.5-1.
[source
benwoodcroft pushed a commit to branch master
in repository guix.
commit a225db529337035b159b2b75714ee18753c26d21
Author: Ben Woodcroft
Date: Sat Dec 10 10:45:08 2016 +1000
gnu: vsearch: Update to 2.3.4.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.3.4.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 23b40c6 gnu: direnv: Update to 2.10.0.
new 2df3d14 gnu: orfm: Update to 0.6.0.
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commit 2df3d147efcbe040d50f104479856fe9033c1716
Author: Ben Woodcroft
Date: Mon Dec 12 20:49:03 2016 +1000
gnu: orfm: Update to 0.6.0.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.0.
---
gnu/packages
benwoodcroft pushed a commit to branch master
in repository guix.
commit 991e143d25e590af5c1b3c81ffd253c7b1de1d5c
Author: Ben Woodcroft
Date: Tue Dec 13 20:01:56 2016 +1000
gnu: diamond: Update to 0.8.29.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.29.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 310248c gnu: libsrtp: Fix building on mips.
new ced1c49 gnu: orfm: Update to 0.6.1.
new 991e143 gnu: diamond: Update to 0.8.29.
The 2 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit ced1c496aa16d9c4c9a7c512c6763e09896c36fb
Author: Ben Woodcroft
Date: Tue Dec 13 20:00:50 2016 +1000
gnu: orfm: Update to 0.6.1.
* gnu/packages/bioinformatics.scm (orfm): Update to 0.6.1.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from 5a38494 gnu: linux-libre: Update to 4.9.
new 42066e6 gnu: Add r-bit.
new ce3f92e gnu: Add r-bit64.
The 2 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit ce3f92e7018e140f5e6b7333a604f26506de6c2a
Author: Ben Woodcroft
Date: Mon Dec 12 21:11:48 2016 +1000
gnu: Add r-bit64.
* gnu/packages/statistics.scm (r-bit64): New variable.
---
gnu/packages/statistics.scm
benwoodcroft pushed a commit to branch master
in repository guix.
commit 42066e6b4aa3670c6cb07558d391fdba07c83b46
Author: Ben Woodcroft
Date: Mon Dec 12 20:59:43 2016 +1000
gnu: Add r-bit.
* gnu/packages/statistics.scm (r-bit): New variable.
---
gnu/packages/statistics.scm
precompiled binary.
Co-authored-by: Ben Woodcroft
---
gnu/packages/bioinformatics.scm |5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3e9c82f..9ce4e3a 100644
--- a/gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from 51ad11a gnu: Add fatfsck-static.
new c9e9154 gnu: star: Update to 2.5.2b.
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benwoodcroft pushed a change to branch master
in repository guix.
from a32d0c8 gnu: sane-backends: Remove timestamps from the output.
new 3fffabc gnu: Add attribution line for Raoul Bonnal.
new a1814e4 gnu: r: Update to 3.3.2.
The 2 revisions listed above as "new" are
benwoodcroft pushed a commit to branch master
in repository guix.
commit 3fffabce2a0e7013379d090a72199df703d5e66d
Author: Ben Woodcroft
Date: Sun Dec 18 09:57:32 2016 +1000
gnu: Add attribution line for Raoul Bonnal.
This is a follow-up commit to
© 2016 Roel Janssen
;;; Copyright © 2016 Ben Woodcroft
+;;; Copyright © 2016 Raoul Bonnal
;;;
;;; This file is part of GNU Guix.
;;;
@@ -101,7 +102,7 @@ be output in text, PostScript, PDF or HTML.")
(define-public r
(package
(name "r")
-(version "3.3.1&qu
benwoodcroft pushed a change to branch master
in repository guix.
from 328398e gnu: Add ripit.
new f1775db gnu: ruby-minitest: Update to 5.10.1.
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benwoodcroft pushed a commit to branch master
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commit f1775db66089d6b69b8061c00432ef04eb970840
Author: Ben Woodcroft
Date: Mon Dec 26 22:43:59 2016 +1000
gnu: ruby-minitest: Update to 5.10.1.
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.1.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from c976b31 gnu: python-stem: Update to 1.5.3.
new 9916ef8 gnu: diamond: Update to 0.8.30.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 9916ef8bb6e83855c2a7a4e972747610b410a3ed
Author: Ben Woodcroft
Date: Tue Dec 27 09:18:05 2016 +1000
gnu: diamond: Update to 0.8.30.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit a29929b32caf9e437d18bdb0cd4d1b22bc096fed
Author: Ben Woodcroft
Date: Fri Dec 30 17:21:37 2016 +1000
gnu: multiqc: Update to 0.9.
Suggested by Raoul Bonnal .
* gnu/packages/bioinformatics.scm
benwoodcroft pushed a change to branch master
in repository guix.
from 95d7d0c gnu: elogind: Enable ACL support.
new a29929b gnu: multiqc: Update to 0.9.
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from 7fc2d37 gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}].
new 322a583 gnu: diamond: Update to 0.8.31.
new 25d84d3 gnu: python-dendropy: Update to 4.2.0.
The 2 revisions listed above as "ne
benwoodcroft pushed a commit to branch master
in repository guix.
commit 25d84d3122b8de29a67d69e8ff5de6660b8d44c5
Author: Ben Woodcroft
Date: Sun Jan 1 16:37:08 2017 +1000
gnu: python-dendropy: Update to 4.2.0.
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0
benwoodcroft pushed a commit to branch master
in repository guix.
commit 322a583fcfff9f5173ad388ee876aa29d9f8edcc
Author: Ben Woodcroft
Date: Sun Jan 1 16:29:11 2017 +1000
gnu: diamond: Update to 0.8.31.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 8e941f2068e18923256964418370206edd934619
Author: Ben Woodcroft
Date: Thu Jan 5 20:49:45 2017 +1000
gnu: ruby-hoe: Update to 3.16.0.
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.16.0.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from 69355e1 doc: Add a Git hook that verifies signatures before
pushing.
new 8e941f2 gnu: ruby-hoe: Update to 3.16.0.
new 19e5fb6 gnu: ruby-nokogiri: Update to 1.7.0.1.
The 2 revisions listed above as
benwoodcroft pushed a commit to branch master
in repository guix.
commit 19e5fb6030a9e901c5e9b6474c25a26e3696643c
Author: Ben Woodcroft
Date: Thu Jan 5 21:00:51 2017 +1000
gnu: ruby-nokogiri: Update to 1.7.0.1.
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.7.0.1.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from e50d5b8 gnu: khal: Disable failing tests.
new 0c37e2a gnu: cd-hit: Update to 4.6.6.
new dbf9d37 gnu: bioruby: Update to 1.5.1.
The 2 revisions listed above as "new" are entirely new to this
reposit
benwoodcroft pushed a commit to branch master
in repository guix.
commit dbf9d371148e4d7b57b600b8ee74cecac9d0abed
Author: Ben J Woodcroft
Date: Fri Jan 6 16:17:42 2017 +1000
gnu: bioruby: Update to 1.5.1.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
---
gnu/packa
benwoodcroft pushed a commit to branch master
in repository guix.
commit 0c37e2a3d2d6871572cb74e10aa9a897b5c4ed93
Author: Ben J Woodcroft
Date: Fri Jan 6 11:03:37 2017 +1000
gnu: cd-hit: Update to 4.6.6.
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
---
gnu/package
benwoodcroft pushed a change to branch master
in repository guix.
from 57fe28a gnu: linux-libre: Update to 4.9.1.
new 6499893 gnu: ruby-yard: Update to 0.9.6.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit 6499893ef82b85e9ba67b9e086e82644b94a55bb
Author: Ben Woodcroft
Date: Sun Jan 8 10:18:41 2017 +1000
gnu: ruby-yard: Update to 0.9.6.
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.6.
[source]: Use
benwoodcroft pushed a commit to branch master
in repository guix.
commit cba53c60d59c9eac6fefabc799834b13ccacc314
Author: Ben Woodcroft
Date: Tue Jan 10 18:38:32 2017 +1000
gnu: ruby-sqlite3: Update to 1.3.13.
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.13.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from d33f889 gnu: linux-libre: Update to 4.9.2.
new cba53c6 gnu: ruby-sqlite3: Update to 1.3.13.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit c0dee46c85c9ae9f9b40f83f693f666fdd3e5d28
Author: Ben Woodcroft
Date: Sat Jan 21 18:17:16 2017 +1000
gnu: r-vegan: Update to 2.4-2.
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-2.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 5aa0932 gnu: linux-libre: Update to 4.9.5.
new cda0f9a gnu: diamond: Update to 0.8.34.
new c0dee46 gnu: r-vegan: Update to 2.4-2.
The 2 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit cda0f9a4a91e69c0d3468138ba2bf16f12dd471e
Author: Ben Woodcroft
Date: Sat Jan 21 17:28:11 2017 +1000
gnu: diamond: Update to 0.8.34.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.34.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 843f25538840bd21e4db11f452332176068060ba
Author: Ben Woodcroft
Date: Mon Jan 23 20:49:00 2017 +1000
gnu: bundler: Update to 1.14.2.
* gnu/packages/ruby.scm (bundler): Update to 1.14.2.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from 4e58e9d gnu: Add libtorrent-rasterbar.
new 843f255 gnu: bundler: Update to 1.14.2.
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from 843f255 gnu: bundler: Update to 1.14.2.
new e4b6c56 gnu: r-ggplot2: Add r-svglite to propagated-inputs.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit e4b6c565beef27a1ce2203a9bc119e84a126e5e0
Author: Ben Woodcroft
Date: Mon Jan 23 21:23:33 2017 +1000
gnu: r-ggplot2: Add r-svglite to propagated-inputs.
* gnu/packages/statistics.scm (r-ggplot2)[propagated
benwoodcroft pushed a commit to branch master
in repository guix.
commit bfaf8efd74e88d99f743845357e3f1ff191e23c2
Author: Ben Woodcroft
Date: Thu Jan 26 08:11:17 2017 +1000
gnu: ruby-minitar: Update to 0.5.4-1.e25205ec.
Fixes the security-related issue reported at
http
benwoodcroft pushed a change to branch master
in repository guix.
from 70dfa4e services: Export guix-configuration getters.
new bfaf8ef gnu: ruby-minitar: Update to 0.5.4-1.e25205ec.
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benwoodcroft pushed a change to branch master
in repository guix.
from 249eb38 gnu: tor: Add hardening configure-flags.
new abb7eb7 gnu: bundler: Update to 1.14.3.
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benwoodcroft pushed a commit to branch master
in repository guix.
commit abb7eb7acafb01e1dc429f765ce15102cebe6f60
Author: Ben Woodcroft
Date: Tue Jan 31 20:16:11 2017 +1000
gnu: bundler: Update to 1.14.3.
* gnu/packages/ruby.scm (bundler): Update to 1.14.3.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from ad167d0 file-systems: Remove dependency on (guix store).
new 182dde8 gnu: cddlib: Fix source URI.
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benwoodcroft pushed a commit to branch master
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commit 182dde82edd9e532c2a90616127cb09056648914
Author: Ben Woodcroft
Date: Sat Feb 4 15:26:26 2017 +1000
gnu: cddlib: Fix source URI.
* gnu/packages/maths.scm (cddlib)[source]: Update source URI.
---
gnu/packages
benwoodcroft pushed a change to branch master
in repository guix.
from c8916c3 gnu: bash-minimal: Assume getcwd works correctly when
cross-compiling
new 206af46 gnu: vsearch: Update to 2.4.0.
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benwoodcroft pushed a commit to branch master
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commit 206af46fe1cc0627e4846167aa5e7c095b21afe3
Author: Ben Woodcroft
Date: Thu Feb 9 21:13:39 2017 +1000
gnu: vsearch: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source
benwoodcroft pushed a commit to branch master
in repository guix.
commit fa73a7c1b3d9b56395152a0284e10171b4fefaed
Author: Ben Woodcroft
Date: Tue Jan 31 21:01:59 2017 +1000
gnu: rustc: Add native-search-paths.
* gnu/packages/rust.scm (rust)[native-search-paths]: New field
benwoodcroft pushed a change to branch master
in repository guix.
from 836cbd9 gnu: ldc: Update to 1.1.0.
new fa73a7c gnu: rustc: Add native-search-paths.
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from d298655 system: Use the normalized codeset for the locale name in
the examples.
new ca11369 gnu: bundler: Update to 1.14.4.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch master
in repository guix.
commit ca113696d6dcd42dd8078254ab87c79c14edd87f
Author: Ben Woodcroft
Date: Mon Feb 13 21:16:37 2017 +1000
gnu: bundler: Update to 1.14.4.
* gnu/packages/ruby.scm (bundler): Update to 1.14.4.
---
gnu/packages
-off-by: Ben Woodcroft
---
gnu/packages/spice.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/gnu/packages/spice.scm b/gnu/packages/spice.scm
index e775174..363a5e8 100644
--- a/gnu/packages/spice.scm
+++ b/gnu/packages/spice.scm
@@ -66,7 +66,7 @@
(source (origin
benwoodcroft pushed a change to branch master
in repository guix.
from ab4ccc8 daemon: Ensure proper alignment on the stack.
new f578a41 gnu: usbredir: Use correct url.
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benwoodcroft pushed a commit to branch master
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commit 51d8039b4ac53dc2f4e0978f6547d5948166c837
Author: Ben Woodcroft
Date: Tue Jul 12 14:02:13 2016 +1000
gnu: parallel: Update to 20160622.
* gnu/packages/parallel.scm (parallel): Update to 20160622.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from cdd8e07 gnu: Add Tmux Themepack.
new 51d8039 gnu: parallel: Update to 20160622.
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commit 7593e50b2635330edb5e82aa767dac7c12d92660
Author: Ben Woodcroft
Date: Mon Jul 18 00:06:21 2016 +1000
gnu: diamond: Update to 0.8.15.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.15.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 67eb385 gnu: hoedown: Update to 3.0.7.
new 7593e50 gnu: diamond: Update to 0.8.15.
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from 26ad4ad gnu: wesnoth: Update to 1.12.6.
new e03a515 gnu: fasttree: Update to 2.1.9.
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commit e03a51530450e85f88dd36ad459f06950eb906ea
Author: Ben Woodcroft
Date: Sat Jul 23 15:15:12 2016 +1000
gnu: fasttree: Update to 2.1.9.
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.9.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from fd6830b gnu: guix: Update revision number in version.
new 12c8f21 gnu: diamond: Update to 0.8.16.
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benwoodcroft pushed a commit to branch master
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commit 12c8f210ee6ba184fd77ebd0566c8cc4855e9636
Author: Ben Woodcroft
Date: Wed Jul 27 23:12:54 2016 +1000
gnu: diamond: Update to 0.8.16.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 12c8f21 gnu: diamond: Update to 0.8.16.
new 9712ef8 gnu: krona-tools: Update to 2.7.
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commit 9712ef8d426375f7bc1975ed4076663176c48735
Author: Ben Woodcroft
Date: Wed Jul 27 23:39:46 2016 +1000
gnu: krona-tools: Update to 2.7.
* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments
benwoodcroft pushed a commit to branch master
in repository guix.
commit f2e791750be25b95540807c2e01c07625b65666c
Author: Ben Woodcroft
Date: Thu Jul 28 20:13:42 2016 +1000
gnu: r-s4vectors: Update to 0.10.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2
benwoodcroft pushed a change to branch master
in repository guix.
from e335b82 gnu: mysql: Update to 5.7.13 [fixes
CVE-2016-{3477,3521,3615,5440}].
new f2e7917 gnu: r-s4vectors: Update to 0.10.2.
The 1 revisions listed above as "new" are entirely new to this
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benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 722b4c919dcc761247ecf79ff5d5d89a467789cb
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:34 2016 +1000
gnu: r-genomicalignments: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-genomicalignments
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit bd0cc378347bbf1edf2a05ffb16dd58c3e34e66a
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:25 2016 +1000
gnu: r-xvector: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 380d3f8657d4700a4d37e78ae8e6bef717c3da93
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:15 2016 +1000
gnu: r-rtracklayer: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 7a0594fb5d724b7bc331dbaf96e6c6421ed9bb07
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:42 2016 +1000
gnu: r-biocparallel: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit ae60f3801acb0c2dbaaa30761a505881fd9a660e
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:06 2016 +1000
gnu: r-annotationdbi: Update to 1.34.4.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 658f36e56951385642823df6f5b6957d242781f7
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:33 2016 +1000
gnu: r-biostrings: Update to 2.40.2.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit ae32c58e2836f1c83609ebbb9eb9a632b63bae49
Author: Ben Woodcroft
Date: Thu Jul 28 21:17:32 2016 +1000
gnu: r-bsgenome: Update to 1.40.1.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 1c4ad6076c8a1667b13eb62bef8ca678fe5e8510
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:41 2016 +1000
gnu: r-limma: Update to 3.28.17.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 362f39d6672f52c4c0839ac6b0d0e2a679e9ddee
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:16 2016 +1000
gnu: r-genomicranges: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update
benwoodcroft pushed a change to branch core-updates
in repository guix.
from d6dfc39 gnu: r-s4vectors: Update to 0.10.2.
new 2d88825 gnu: r-genomicfeatures: Update to 1.24.5.
new 303163c gnu: r-genomeinfodb: Update to 1.8.3.
new 380d3f8 gnu: r-rtracklayer: Up
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 0d159d84e2bbd6140ce524cfe330ea2973a843de
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:44 2016 +1000
gnu: r-summarizedexperiment: Update to 1.2.3.
* gnu/packages/bioinformatics.scm (r
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 303163c7b99fa299904107601118edb0eaffcb92
Author: Ben Woodcroft
Date: Thu Jul 28 20:52:50 2016 +1000
gnu: r-genomeinfodb: Update to 1.8.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit e426cd7421d18db15a925c1aff58bacccdd3c63a
Author: Ben Woodcroft
Date: Thu Jul 28 21:10:05 2016 +1000
gnu: r-iranges: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1
benwoodcroft pushed a commit to branch core-updates
in repository guix.
commit 2d88825183c74d3726a609d6cbd58ef4c2aa0046
Author: Ben Woodcroft
Date: Thu Jul 28 20:34:00 2016 +1000
gnu: r-genomicfeatures: Update to 1.24.5.
* gnu/packages/bioinformatics.scm (r-genomicfeatures
benwoodcroft pushed a commit to branch master
in repository guix.
commit a22999f245a32b1e58fe8916392bc1b2712d1b3c
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:42 2016 +1000
gnu: r-biocparallel: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3
benwoodcroft pushed a change to branch master
in repository guix.
from f2e7917 gnu: r-s4vectors: Update to 0.10.2.
new 2a3e325 gnu: r-genomeinfodb: Update to 1.8.3.
new 5131e21 gnu: r-rtracklayer: Update to 1.32.2.
new 29b0cc8 gnu: r-genomicalignments: Update
benwoodcroft pushed a commit to branch master
in repository guix.
commit 1864e051c9cf9bf58fee7800e99a692b25edaf69
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:44 2016 +1000
gnu: r-summarizedexperiment: Update to 1.2.3.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment
benwoodcroft pushed a commit to branch master
in repository guix.
commit 29b0cc8ad57952e9f4dd30cd5966117f848a69b6
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:34 2016 +1000
gnu: r-genomicalignments: Update to 1.8.4.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update
benwoodcroft pushed a commit to branch master
in repository guix.
commit a463055862e0b1e37bab41f76bb10537af5c42e8
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:16 2016 +1000
gnu: r-genomicranges: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit d104fc607d885c945a66b13255629c1fbffa14dc
Author: Ben Woodcroft
Date: Thu Jul 28 21:08:33 2016 +1000
gnu: r-biostrings: Update to 2.40.2.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2b2ff0bd917cad949a974dd0e584e2b1f7ad6a5d
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:25 2016 +1000
gnu: r-xvector: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2a3e325f5e0a3ccb27ab6c1730d488e5ac0b536d
Author: Ben Woodcroft
Date: Thu Jul 28 20:52:50 2016 +1000
gnu: r-genomeinfodb: Update to 1.8.3.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3
benwoodcroft pushed a commit to branch master
in repository guix.
commit 6547708f718316dac79de845aabb7220122385a7
Author: Ben Woodcroft
Date: Thu Jul 28 21:54:44 2016 +1000
gnu: r-genomicfeatures: Update to 1.24.5.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit bab15ccec478d119ab197a2576422e6a08f2338f
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:06 2016 +1000
gnu: r-annotationdbi: Update to 1.34.4.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to
benwoodcroft pushed a commit to branch master
in repository guix.
commit 5131e210644857217fdf9bf0e824d1f51b983f3d
Author: Ben Woodcroft
Date: Thu Jul 28 21:07:15 2016 +1000
gnu: r-rtracklayer: Update to 1.32.2.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2
benwoodcroft pushed a commit to branch master
in repository guix.
commit b0f0778a7c040b1f3f409681f24491d0610a3a21
Author: Ben Woodcroft
Date: Thu Jul 28 21:10:05 2016 +1000
gnu: r-iranges: Update to 2.6.1.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit 2c9f6251fc4e60ad84b3698e53879060ce50ee48
Author: Ben Woodcroft
Date: Thu Jul 28 21:17:32 2016 +1000
gnu: r-bsgenome: Update to 1.40.1.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1
benwoodcroft pushed a commit to branch master
in repository guix.
commit f403941f811b54873511d0cd2c9da2c54cffb82f
Author: Ben Woodcroft
Date: Thu Jul 28 21:09:41 2016 +1000
gnu: r-limma: Update to 3.28.17.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17.
---
gnu
benwoodcroft pushed a commit to branch master
in repository guix.
commit c4382cd18f497506d873a0afbcb8d8caa3a4b4ad
Author: Ben Woodcroft
Date: Sat Jul 30 23:02:57 2016 +1000
gnu: diamond: Update to 0.8.17.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.17.
---
gnu
benwoodcroft pushed a change to branch master
in repository guix.
from 9b12bc7 gnu: gnunet-gtk: Configure with gnunet path.
new c4382cd gnu: diamond: Update to 0.8.17.
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