mbakke pushed a commit to branch core-updates
in repository guix.
commit bc2076f053d66b8293db800710bc72a7f5617396
Author: Marius Bakke <mba...@fastmail.com>
Date: Thu Jul 18 23:29:07 2019 +0200
gnu: bpp: Use the default GCC.
* gnu/packages/bioinformatics.scm (bpp-core, bpp-phyl, bpp-popgen, bpp-seq,
bppsuite)[inputs]: Remove GCC-5.
---
gnu/packages/bioinformatics.scm | 17 ++++-------------
1 file changed, 4 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bfac90e..e25a4e1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1109,9 +1109,6 @@ relying on a complex dependency tree.")
(build-system cmake-build-system)
(arguments
`(#:parallel-build? #f))
- (inputs
- `(("gcc" ,gcc-5))) ; Compilation of bpp-phyl fails with GCC 4.9 so we
- ; compile all of the bpp packages with GCC 5.
(home-page "http://biopp.univ-montp2.fr";)
(synopsis "C++ libraries for Bioinformatics")
(description
@@ -1147,10 +1144,7 @@ providing them a set of re-usable tools.")
#:out-of-source? #f))
(inputs
`(("bpp-core" ,bpp-core)
- ("bpp-seq" ,bpp-seq)
- ;; GCC 4.8 fails due to an 'internal compiler error', so we use a more
- ;; modern GCC.
- ("gcc" ,gcc-5)))
+ ("bpp-seq" ,bpp-seq)))
(home-page "http://biopp.univ-montp2.fr";)
(synopsis "Bio++ phylogenetic Library")
(description
@@ -1182,8 +1176,7 @@ library provides phylogenetics-related modules.")
#:tests? #f)) ; There are no tests.
(inputs
`(("bpp-core" ,bpp-core)
- ("bpp-seq" ,bpp-seq)
- ("gcc" ,gcc-5)))
+ ("bpp-seq" ,bpp-seq)))
(home-page "http://biopp.univ-montp2.fr";)
(synopsis "Bio++ population genetics library")
(description
@@ -1216,8 +1209,7 @@ library provides population genetics-related modules.")
;; so the tests fail.
#:out-of-source? #f))
(inputs
- `(("bpp-core" ,bpp-core)
- ("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'.
+ `(("bpp-core" ,bpp-core)))
(home-page "http://biopp.univ-montp2.fr";)
(synopsis "Bio++ sequence library")
(description
@@ -1255,8 +1247,7 @@ library provides sequence-related modules.")
`(("bpp-core" ,bpp-core)
("bpp-seq" ,bpp-seq)
("bpp-phyl" ,bpp-phyl)
- ("bpp-phyl" ,bpp-popgen)
- ("gcc" ,gcc-5)))
+ ("bpp-phyl" ,bpp-popgen)))
(home-page "http://biopp.univ-montp2.fr";)
(synopsis "Bioinformatics tools written with the Bio++ libraries")
(description
