rekado pushed a change to branch master
in repository guix.
from 8243f4e gnu: slang: Use a correct location for terminfo dirs.
new bfa5662 gnu: Add r-rcppannoy.
new b58940c gnu: Add r-ncdf4.
new 1e605c0 gnu: Add r-biocmanager.
new 61686921 gnu: r-hpar: Update to 1.24.0.
new 9865256 gnu: r-diffbind: Update to 2.10.0.
new f1c606c gnu: r-marray: Update to 1.60.0.
new 46cdcee gnu: r-cghbase: Update to 1.42.0.
new 9add093 gnu: r-cghcall: Update to 2.44.0.
new a92f523 gnu: r-qdnaseq: Update to 1.18.0.
new 95ee4a4 gnu: r-multtest: Update to 2.38.0.
new 14520b6 gnu: r-graph: Update to 1.60.0.
new 57d2fcd gnu: r-chippeakanno: Update to 3.16.0.
new 4728e27 gnu: r-bayseq: Update to 2.16.0.
new aa802ea gnu: r-chipcomp: Update to 1.12.0.
new e9427b2 gnu: r-ripseeker: Update to 1.22.0.
new e22e462 gnu: r-riboprofiling: Update to 1.12.0.
new c4fed65 gnu: r-riboseqr: Update to 1.16.0.
new bbc4787 gnu: r-interactionset: Update to 1.10.0.
new 5f2d0e6 gnu: r-genomicinteractions: Update to 1.16.0.
new b858338 gnu: r-ctc: Update to 1.56.0.
new 6ea9ae9 gnu: r-goseq: Update to 1.34.0.
new 016afac gnu: r-glimma: Update to 1.10.0.
new c348cfe gnu: r-rots: Update to 1.10.0.
new 6f1e1d0 gnu: r-inspect: Update to 1.12.0.
new 318bcbc gnu: r-dnabarcodes: Update to 1.12.0.
new 286157d gnu: Add r-biocneighbors.
new ed35d7c gnu: r-ruvseq: Update to 1.16.0.
new d639d88 gnu: r-regioner: Update to 1.14.0.
new bb47aca gnu: Add hdf5-1.10.
new 269182b gnu: r-rgraphviz: Update to 2.26.0.
new 0dd84df gnu: r-ps: Update to 1.2.1.
new 65dd0e6 gnu: r-pkgload: Update to 1.0.2.
new ec0ee08 gnu: r-ffbase: Update to 0.12.7.
new 56af171 gnu: r-ipred: Update to 0.9-8.
new 5d986a3 gnu: r-psych: Update to 1.8.10.
new cea8a60 gnu: r-xts: Update to 0.11-2.
new 84d0d86 gnu: r-sjmisc: Update to 2.7.6.
new 244a5c4 gnu: r-flextable: Update to 0.4.6.
new 3d6fa1a gnu: r-sessioninfo: Update to 1.1.1.
new fc532b4 gnu: r-remotes: Update to 2.0.2.
new 7466c3b gnu: r-rcmdcheck: Update to 1.3.1.
new a44f8b0 gnu: r-pander: Update to 0.6.3.
new 600a25e gnu: r-mass: Update to 7.3-51.1.
new 1966d8f gnu: r-lattice: Update to 0.20-38.
new 83ca17d gnu: r-matrix: Update to 1.2-15.
new 0de3ebb gnu: r-survival: Update to 2.43-1.
new 9094eb8 gnu: r-roxygen2: Update to 6.1.1.
new 466397c gnu: r-dt: Update to 0.5.
new 1b35523 gnu: r-tidyr: Update to 0.8.2.
new 9bd7848 gnu: r-preprocesscore: Update to 1.44.0.
new 00281ea gnu: r-modelmetrics: Update to 1.2.2.
new 090d4c0 gnu: r-annotate: Update to 1.60.0.
new dadd682 gnu: r-copynumber: Update to 1.22.0.
new f4a95a0 gnu: r-geneplotter: Update to 1.60.0.
new 85fb33a gnu: r-genefilter: Update to 1.64.0.
new b5c552e gnu: r-deseq2: Update to 1.22.1.
new 856444a gnu: r-dexseq: Update to 1.28.0.
new 2ff6604 gnu: r-annotationforge: Update to 1.24.0.
new 19a6149 gnu: r-rbgl: Update to 1.58.0.
new 6dfb0b2 gnu: r-gseabase: Update to 1.44.0.
new 95ae5ac gnu: r-category: Update to 2.48.0.
new 4a4b5b8 gnu: r-gostats: Update to 2.48.0.
new 9adf78c gnu: r-shortread: Update to 1.40.0.
new bf25930 gnu: r-systempiper: Update to 1.16.0.
new 5c996ca gnu: r-grohmm: Update to 1.16.0.
new 2f28ffd gnu: r-biocgenerics: Update to 0.28.0.
new 36d7d82 gnu: r-biocinstaller: Update to 1.32.1.
new c8dbb5f gnu: r-biocviews: Update to 1.50.1.
new 6087f5c gnu: r-biocstyle: Update to 2.10.0.
new a127d35 gnu: r-bioccheck: Update to 1.18.0.
new 70f2758 gnu: r-dnacopy: Update to 1.56.0.
new a037453 gnu: r-s4vectors: Update to 0.20.0.
new 9a8dd51 gnu: r-iranges: Update to 2.16.0.
new 1287169 gnu: r-genomeinfodb: Update to 1.18.0.
new 08cd2d5 gnu: r-edger: Update to 3.24.0.
new ca2945c gnu: r-variantannotation: Update to 1.28.1.
new 78d2ffd gnu: r-limma: Update to 3.38.2.
new fb10fb7 gnu: r-xvector: Update to 0.22.0.
new 8d3906a gnu: r-genomicranges: Update to 1.34.0.
new 5b82e12 gnu: r-biobase: Update to 2.42.0.
new 3986e0d gnu: r-annotationdbi: Update to 1.44.0.
new 3359d44 gnu: r-biomart: Update to 2.38.0.
new cd88289 gnu: r-biocparallel: Update to 1.16.0.
new 4804c59 gnu: r-biostrings: Update to 2.50.0.
new 7f3778e gnu: r-rsamtools: Update to 1.34.0.
new de4c38f gnu: r-delayedarray: Update to 0.8.0.
new 9fd4350 gnu: r-summarizedexperiment: Update to 1.12.0.
new 52b9533 gnu: r-genomicalignments: Update to 1.18.0.
new c5f1d1c gnu: r-rtracklayer: Update to 1.42.0.
new 8a0d57d gnu: r-genomicfeatures: Update to 1.34.1.
new 44fa14d gnu: r-topgo: Update to 2.34.0.
new 78ecdbc gnu: r-bsgenome: Update to 1.50.0.
new d11bc25 gnu: r-impute: Update to 1.56.0.
new 45ba2ca gnu: r-seqpattern: Update to 1.14.0.
new c5b0815 gnu: r-genomation: Update to 1.14.0.
new 34f1c60 gnu: r-seqlogo: Update to 1.48.0.
new 2919fef gnu: r-motifrg: Update to 1.26.0.
new 7d7c702 gnu: r-zlibbioc: Update to 1.28.0.
new 4819689 gnu: r-rhtslib: Update to 1.14.0.
new 338f860 gnu: r-bamsignals: Update to 1.14.0.
new ad90921 gnu: r-mutationalpatterns: Update to 1.8.0.
new d2b60be gnu: r-tximport: Update to 1.10.0.
new cec8f09 gnu: r-annotationfilter: Update to 1.6.0.
new 2e9d811 gnu: r-chipseq: Update to 1.32.0.
new 739a856 gnu: r-copywriter: Update to 2.14.0.
new 18604a7 gnu: r-methylkit: Update to 1.8.0.
new 8af8688 gnu: r-sva: Update to 3.30.0.
new 691ce09 gnu: r-protgenerics: Update to 1.14.0.
new 511abd7 gnu: r-affyio: Update to 1.52.0.
new 2b08548 gnu: r-affy: Update to 1.60.0.
new 0e16fc4 gnu: r-vsn: Update to 3.50.0.
new 2c4311d gnu: r-mzid: Update to 1.20.0.
new 73d7475 gnu: r-pcamethods: Update to 1.74.0.
new 762aca7 gnu: r-msnbase: Update to 2.8.0.
new 675d91a gnu: r-msnid: Update to 1.16.0.
new 800954e gnu: r-aroma-light: Update to 3.12.0.
new 7812e6b gnu: r-deseq: Update to 1.34.0.
new b03951f gnu: r-edaseq: Update to 2.16.0.
new d7ea34b gnu: r-interactivedisplaybase: Update to 1.20.0.
new 147633d gnu: r-annotationhub: Update to 2.14.1.
new 95df764 gnu: r-fastseg: Update to 1.28.0.
new 4984212 gnu: r-keggrest: Update to 1.22.0.
new 122e099 gnu: r-gage: Update to 2.32.0.
new d78c6ac gnu: r-genomicfiles: Update to 1.18.0.
new 5ae5a8e gnu: r-complexheatmap: Update to 1.20.0.
new 0c96e4b gnu: r-dirichletmultinomial: Update to 1.24.0.
new e8e78c4 gnu: r-ensembldb: Update to 2.6.0.
new cdab2dc gnu: r-organismdbi: Update to 1.24.0.
new e7a0bc1 gnu: r-biovizbase: Update to 1.30.0.
new f20c766 gnu: r-ggbio: Update to 1.30.0.
new 181a843 gnu: r-gqtlbase: Update to 1.14.0.
new 220ac15 gnu: r-snpstats: Update to 1.32.0.
new 4b91335 gnu: r-erma: Update to 0.14.0.
new da679b5 gnu: r-ldblock: Update to 1.12.0.
new ea55326 gnu: r-gqtlstats: Update to 1.14.0.
new d57445c gnu: r-gviz: Update to 1.26.0.
new 85b16c0 gnu: r-gwascat: Update to 2.14.0.
new 7468a76 gnu: r-sushi: Update to 1.20.0.
new 8023912 gnu: r-fithic: Update to 1.8.0.
new d055f19 gnu: r-hitc: Update to 1.26.0.
new edb9124 gnu: r-qvalue: Update to 2.14.0.
new 3c83360 gnu: r-beachmat: Update to 1.4.0.
new f93ec63 gnu: r-singlecellexperiment: Update to 1.4.0.
new 48f2791 gnu: r-scater: Update to 1.10.0.
new 70a3a76 gnu: r-scran: Update to 1.10.1.
new 900ce2b gnu: r-delayedmatrixstats: Update to 1.4.0.
new a1c2bf8 gnu: r-rcas: Update to 1.8.0.
new 611a255 gnu: r-rhdf5: Update to 2.26.0.
new 8e48d36 gnu: r-hdf5array: Update to 1.10.0.
new 37200db gnu: r-rhdf5lib: Update to 1.4.0.
new 9255198 gnu: r-mzr: Update to 2.16.0.
The 151 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/packages/bioconductor.scm | 134 +++++++-----
gnu/packages/bioinformatics.scm | 469 ++++++++++++++++++++--------------------
gnu/packages/cran.scm | 128 ++++++++---
gnu/packages/graph.scm | 4 +-
gnu/packages/maths.scm | 19 ++
gnu/packages/statistics.scm | 39 ++--
6 files changed, 453 insertions(+), 340 deletions(-)
