Re: A packaging mailing list for bioinformatics

Pjotr Prins skribis: > Together with the Open Bioinformatics Foundation we have created a new > mailing list which allows discussions on bioinformatics specific > challenges of deployment and reproducibility. We expect to increase > interest in GNU Guix this way. This is a great initiative. Th

Re: [PATCH] guix environment: Add --ad-hoc option.

David Thompson skribis: > I find myself frequently wanting to quickly create an environment with > just a few packages in it, without having to go through the song and > dance of creating a package expression for it. This patch addresses > this use-case. Yeah, nice! > From 30a5b0f61e5c4a0e0244

Re: [PATCH] Add libsvm.

>> + (uri (string-append >> + "https://github.com/cjlin1/libsvm/archive/v"; >> + (string-join (string-split version #\.) "") ".tar.gz")) > > (string-delete #\. version) Oh, that's better, indeed! > Also, please add a 'file-name' field so that the source filename in

Re: A packaging mailing list for bioinformatics

"Thompson, David" writes: > On Thu, May 28, 2015 at 12:56 PM, John Darrington > wrote: >> On Thu, May 28, 2015 at 06:43:23PM +0200, Pjotr Prins wrote: >> We expect to increase >> interest in GNU Guix this way. >> >> >> That is a very poor attempt to

Re: [PATCH] Add libsvm.

Hi Ricardo. Please see below for comments. Ricardo Wurmus writes: > From bbd4a72d89762f93816cfe4ed917c55ffe19bac8 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Thu, 28 May 2015 15:53:14 +0200 > Subject: [PATCH] gnu: Add libsvm. > > * gnu/packages/machine-learning.scm: New file. > * g

Re: A packaging mailing list for bioinformatics

On Thu, May 28, 2015 at 12:56 PM, John Darrington wrote: > On Thu, May 28, 2015 at 06:43:23PM +0200, Pjotr Prins wrote: > We expect to increase > interest in GNU Guix this way. > > > That is a very poor attempt to justify spamming this list. It's not

Re: Daemon update

I have some good progress finally. I started from scratch and pulled the latest from git. I am now running guix-daemon as root with only one option --no-substitutes. The make guix-binary* ran for hours and built a lot of stuff (bash, gcc, perl, etc) but stumbled upon openldap which doesn't seem to

Re: A packaging mailing list for bioinformatics

On Thu, May 28, 2015 at 06:43:23PM +0200, Pjotr Prins wrote: We expect to increase interest in GNU Guix this way. That is a very poor attempt to justify spamming this list. -- PGP Public key ID: 1024D/2DE827B3 fingerprint = 8797 A26D 0854 2EA

A packaging mailing list for bioinformatics

Together with the Open Bioinformatics Foundation we have created a new mailing list which allows discussions on bioinformatics specific challenges of deployment and reproducibility. We expect to increase interest in GNU Guix this way. See http://www.open-bio.org/wiki/Bio-packaging Pjotr and

Re: Guix "ops"

On Wed, May 27, 2015 at 3:41 PM, Ludovic Courtès wrote: > David Thompson skribis: > >> Ludovic Courtès writes: >> >>> Perhaps one addition eventually would be to allow IPs to be >>> automatically allocated and have host name lookup DTRT in each VM. >> >> Do you have any idea how we could do that

Re: Guix "ops"

On Wed, May 27, 2015 at 2:47 PM, Carlos Sosa wrote: > David Thompson writes: > >> Thinking out loud here: Maybe 'guix deploy' can kick off the >> provisioning for all machines first, and afterwards the OS configs can >> be altered to include the correct /etc/hosts file. > > I like the idea of `

[PATCH] Add libsvm.

>From bbd4a72d89762f93816cfe4ed917c55ffe19bac8 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 28 May 2015 15:53:14 +0200 Subject: [PATCH] gnu: Add libsvm. * gnu/packages/machine-learning.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. --- gnu-system.am

[PATCH] guix environment: Add --ad-hoc option.

I find myself frequently wanting to quickly create an environment with just a few packages in it, without having to go through the song and dance of creating a package expression for it. This patch addresses this use-case. >From 30a5b0f61e5c4a0e0244015f127ba3255f834139 Mon Sep 17 00:00:00 2001 Fr

Re: [PATCH] profiles: Add gtk-icon-themes hook.

Mark H Weaver skribis: >?: 3 [primitive-load > "/gnu/store/lzw4b84kd5fm8j4cgl3jlb5k38v93ql4-gtk-icon-themes-builder"] > In ice-9/boot-9.scm: > 775: 2 [for-each # #] > In ice-9/eval.scm: > 432: 1 [eval # #] > In unknown file: >?: 0 [scm-error wrong-type-arg "for-each" "Not a list: ~S" (

Re: Guix Oficial Website

Luis Felipe López Acevedo skribis: > I think I did push it: > > http://git.savannah.gnu.org/cgit/guix/guix-artwork.git/commit/?id=dc741a7064bfc55edf2139ace8137632e18960c7 > > The live website is already using the declaration... My bad, sorry for the confusion. Ludo’.