gnu: guile-minikanren: Fix README location.

When I originally wrote this package I had it install the README to the output directory's /share/doc/README.org instead of /share/doc/guile-minikanren/README.org. Fixed! >From b38d1abd1cfd57d2c22d8c076a5ddfe7e9ab7256 Mon Sep 17 00:00:00 2001 From: Christopher Allan Webber Date: Tue, 21 Jul 2015

Re: [PATCH 3/3] gnu: Add python-pelican

Ludovic Courtès writes: >> +(inputs >> + `(("python-setuptools" ,python-setuptools) > > Move this one to ‘native-inputs’. Done! Though... I think we should be careful with the assumption that this is true or should be done without looking careful. For example, MediaGoblin actually *uses

Re: Texinfo in descriptions?

l...@gnu.org (Ludovic Courtès) writes: > However, as I wrote, this would be an important change, and I wouldn’t > know how to handle translations (basically ‘xgettext’ would not work > here.) That also entails quite some work on the UI side: rendering, > --search handling, etc. Yeah, I don't know

Re: Using a shared Guix store (was RE: [Bio-packaging] testing out guix)

> I have resolved a main issue by having /gnu mounted without root > squashing and running gnu-daemon as root, as strongly suggested after > building with `./configure --localstatedir=/gnu/var > --exec-prefix=/gnu` > > And I am proceeding largely happily. > > So WOOHOO and WHOOWHEE and gen

RE: Using a shared Guix store (was RE: [Bio-packaging] testing out guix)

Hi, I have resolved a main issue by having /gnu mounted without root squashing and running gnu-daemon as root, as strongly suggested after building with `./configure --localstatedir=/gnu/var --exec-prefix=/gnu` And I am proceeding largely happily. So WOOHOO and WHOOWHEE and general ap

Re: [PATCH] gnu: teckit: Update to 2.5.4.

On Sun, Jul 19, 2015 at 12:46:50PM -0400, Mark H Weaver wrote: > If that's because of the shebang in autogen.sh itself, then the easy > solution to that problem is to do (system* "sh" "autogen.sh"). It has > to be done after 'unpack', not before 'configure', because otherwise > 'patch-usr-bin-file

Re: Last-minute testing

ajpat...@uwaterloo.ca skribis: > Quoting Ludovic Courtès : [...] >> Also, the user?s home directory should definitely be created >> automatically. > > My partition layout has separate /, /home, /boot. I specified these in > config.scm, but should I have also mounted them (or at least /home) > be

Re: Last-minute testing

Adam Pribyl skribis: > On Tue, 21 Jul 2015, ajpat...@uwaterloo.ca wrote: > >> Quoting Ludovic Courtès : >> >>> >>> As it turns out, ?root? is initialized with an empty password, and for >>> other users, you shouldn?t use the ?password? field of up >>> ?user-account?. >>> >>>

Re: Last-minute testing

On Tue, 21 Jul 2015, ajpat...@uwaterloo.ca wrote: Quoting Ludovic Courtès : As it turns out, ?root? is initialized with an empty password, and for other users, you shouldn?t use the ?password? field of up ?user-account?.

Re: [PATCH] gnu: Add hoedown.

On Tue, Jul 21, 2015 at 2:53 PM, Mark H Weaver wrote: > David Thompson writes: > >> From 567748faa4e3e03fe9b106a8ea61843a2d31409d Mon Sep 17 00:00:00 2001 >> From: David Thompson >> Date: Sun, 19 Jul 2015 10:41:34 -0400 >> Subject: [PATCH] gnu: Add hoedown. > > Sorry for not reviewing this earli

Re: [PATCH] gnu: Add hoedown.

David Thompson writes: > From 567748faa4e3e03fe9b106a8ea61843a2d31409d Mon Sep 17 00:00:00 2001 > From: David Thompson > Date: Sun, 19 Jul 2015 10:41:34 -0400 > Subject: [PATCH] gnu: Add hoedown. Sorry for not reviewing this earlier, but... > + '(#:phases (modify-phases %standard-phases >

Re: [PATCH] Attempt to fix OpenBLAS on MIPS.

Mark H Weaver writes: > Ricardo Wurmus writes: > >> Attached is a patch that *might* fix the build of OpenBLAS on MIPS. >> >> The LOONGSON3A and LOONGSON3B targets both enable the use of special >> extended instructions which may not be available on other MIPS CPUs. >> This patch forces the SICO

Re: Last-minute testing

Quoting Ludovic Courtès : As it turns out, ?root? is initialized with an empty password, and for other users, you shouldn?t use the ?password? field of up ?user-account?. tries to make that clear, but perhaps there?s misle

Re: [PATCH 1/3] gnu: man-db: Pass --with-col to configure.

Alex Kost skribis: > BTW (a note for Ludovic), the current man behaviour "breaks" completions > of many commands provided by "pcmpl-args" emacs package, because > 'pcmpl-args-extract-argspecs-from-manpage' can't parse a man page to find > completions. For example, "sudo --" (in shell-mode) doesn

Re: Last-minute testing

Andy Patterson skribis: > I tested it out last night. I got it to install; it boots fine; I can > log in as root; things work. Unfortunately I left out a password in my > config.scm for the user account I wanted to create. I tried changing > this quickly with passwd, but this caused the session m

Re: [PATCH] Attempt to fix OpenBLAS on MIPS.

Ricardo Wurmus writes: > Attached is a patch that *might* fix the build of OpenBLAS on MIPS. > > The LOONGSON3A and LOONGSON3B targets both enable the use of special > extended instructions which may not be available on other MIPS CPUs. > This patch forces the SICORTEX target to be used, which sh

Re: [PATCH 3/3] gnu: man-db: Update to 2.7.1.

On Tue, Jul 21, 2015 at 10:58 AM, Alex Kost wrote: > The new version tries to create "/usr/lib/tmpfiles.d" during install > phase, so I added "--with-systemdtmpfilesdir=" flag. Unhappily there is > no "--disable-systemd" or alike. > LGTM. - Dave

Re: [PATCH 1/3] gnu: man-db: Pass --with-col to configure.

On Tue, Jul 21, 2015 at 10:57 AM, Alex Kost wrote: > Quote from "man man": > > --8<---cut here---start->8--- > Normally, when output is not being directed to a terminal (such as to a > file or a pipe), formatting characters are discarded to make it easier > to r

Re: [PATCH 2/3] gnu: libpipeline: Update to 1.4.0.

On Tue, Jul 21, 2015 at 10:57 AM, Alex Kost wrote: > There were no problems with this update. LGTM. Please push. - Dave

[PATCH 3/3] gnu: man-db: Update to 2.7.1.

The new version tries to create "/usr/lib/tmpfiles.d" during install phase, so I added "--with-systemdtmpfilesdir=" flag. Unhappily there is no "--disable-systemd" or alike. >From f1aaef17f561e77b0178ec260e400830ee963bf7 Mon Sep 17 00:00:00 2001 From: Alex Kost Date: Tue, 21 Jul 2015 17:15:09 +0

[PATCH 1/3] gnu: man-db: Pass --with-col to configure.

Quote from "man man": --8<---cut here---start->8--- Normally, when output is not being directed to a terminal (such as to a file or a pipe), formatting characters are discarded to make it easier to read the result without special tools. --8<---cut he

[PATCH 2/3] gnu: libpipeline: Update to 1.4.0.

There were no problems with this update. >From 8c2647c990c38405929fa08b10d659d397e1d055 Mon Sep 17 00:00:00 2001 From: Alex Kost Date: Tue, 21 Jul 2015 17:13:08 +0300 Subject: [PATCH 2/3] gnu: libpipeline: Update to 1.4.0. * gnu/packages/man.scm (libpipeline): Update to 1.4.0. --- gnu/packages/

Re: [PATCH] Add aragorn.

Thompson, David writes: > On Tue, Jul 21, 2015 at 9:57 AM, Ricardo Wurmus > wrote: >> Something’s wrong with the alignment of the ‘(replace 'install ...)’. >> If there are no objections I can fix the alignment and push without >> requesting another version of the patch. >> >> But I think I bett

Re: [PATCH] Add (minimal) BioPerl.

On Tue, 21 Jul 2015 10:41:19 +0200 Ricardo Wurmus wrote: > +(define-public bioperl-minimal > + (let* ((inputs `(("perl-module-build" ,perl-module-build) > + ("perl-data-stag" ,perl-data-stag) > + ("perl-libwww" ,perl-libwww) > + ("perl-uri" ,

Re: [PATCH] Add aragorn.

On Tue, Jul 21, 2015 at 9:57 AM, Ricardo Wurmus wrote: > Something’s wrong with the alignment of the ‘(replace 'install ...)’. > If there are no objections I can fix the alignment and push without > requesting another version of the patch. > > But I think I better wait for other comments. Looks f

Re: [PATCH] Add aragorn.

Something’s wrong with the alignment of the ‘(replace 'install ...)’. If there are no objections I can fix the alignment and push without requesting another version of the patch. But I think I better wait for other comments.

Re: [PATCH] Add aragorn.

On 21/07/15 23:40, Ricardo Wurmus wrote: Other than that it looks fine to me! Thanks! Ta. Fixed those two things plus some grammar in the description. >From 4ac97beef55a5321a9990244ebfcdde38051ff9a Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Tue, 21 Jul 2015 23:52:31 +1000 Subject: [PATC

Re: [PATCH] Add aragorn.

Ben Woodcroft writes: > +(define-public aragorn > + (package > +(name "aragorn") > +(version "1.2.36") > +(source (origin > + (method url-fetch) > + (uri (string-append > + > "http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn";

[PATCH] Add aragorn.

>From 12e455874cf563269efc872235738e0ab4848638 Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Tue, 21 Jul 2015 23:08:58 +1000 Subject: [PATCH] gnu: Add aragorn. * gnu/packages/bioinformatics.scm (aragorn): New variable --- gnu/packages/bioinformatics.scm | 51 ++

Re: Last-minute testing

Hi Ludovic, I tested it out last night. I got it to install; it boots fine; I can log in as root; things work. Unfortunately I left out a password in my config.scm for the user account I wanted to create. I tried changing this quickly with passwd, but this caused the session manager to fail when l

Re: Last-minute testing

On 2015-07-20 19:48, l...@gnu.org wrote: Hello, I would be grateful if someone could test this installation image within the next 18 hours (ouch! shame on me!): http://www.fdn.fr/~lcourtes/software/guix/guixsd-usb-install-0.8.3pre.x86_64-linux.xz SHA1: 31f4eef6523509a567b250adafdaf086be5f4

Re: [PATCH] gnu: cross-base: Disable libcilkrts in cross-gcc.

Updated patch. From 508b411414809e7185d9c9d7ed782bdddc07c1b5 Mon Sep 17 00:00:00 2001 From: Manolis Ragkousis Date: Sun, 19 Jul 2015 18:16:51 +0300 Subject: [PATCH] gnu: cross-base: Disable libcilkrts in cross-gcc. * gnu/packages/cross-base.scm (cross-gcc-arguments): Add "--disable-libcilkrts". -

Re: Last-minute testing

Adam Pribyl skribis: > I am not following the development thoroughly, here is my quick one: > 1. downloaded, unpacked, put on USB > 2. USB boots on a real hw > 3. my older config.scm needs changes: > a) dbus and dbus-service unknown, removed them (I should probably use > desktop-services?), Yes,

[PATCH] gnu: cross-base: Add cross-kernel-headers package for cross-gcc.

This patch adds a cross-kernel-headers package wrapper which returns the headers for the current target system. It's either the xlinux-headers for linux, or a union of Mach + Hurd headers with the hurd-minimal libs. Tested it for both Linux and Hurd. Manolis From ff3604b86fa555ec963cc138b1230bcd

Re: Last-minute testing

On Tue, 21 Jul 2015, Ludovic Courtès wrote: Hello, I would be grateful if someone could test this installation image within the next 18 hours (ouch! shame on me!): http://www.fdn.fr/~lcourtes/software/guix/guixsd-usb-install-0.8.3pre.x86_64-linux.xz SHA1: 31f4eef6523509a567b250adafdaf086be5

Re: [PATCH] Add (minimal) BioPerl.

Ludovic Courtès writes: >> Is there a better way to make sure that all (direct and transient) >> runtime dependencies can be found through the PERL5LIB variable? > > Good question. The #:inputs parameter of build phases contains all the > inputs (native, normal, and propagated) when not cross-c