Re: [PATCH] Add MAFFT.

2015-09-07 Thread Andreas Enge
On Tue, Aug 25, 2015 at 10:58:42PM +0200, Ludovic Courtès wrote: > It seems this message was left unanswered. Andreas? I had a cursory look at the patch, here are some comments: On Thu, Jul 23, 2015 at 10:43:31PM +1000, Ben Woodcroft wrote: > + #:make-flags (list (string-append "PREFIX=" (

Re: [PATCH] Add gMTP.

2015-09-07 Thread Andreas Enge
This looks good and very useful, thanks! Andreas

Re: [PATCH] Add MAFFT.

2015-09-07 Thread Ricardo Wurmus
Andreas Enge writes: >> +protein sequences. For instance, it offers L-INS-i (accurate; for alignment >> +of > Is this an artefact of the mailer? In the original patch I see this instead: > + "MAFFT offers a range of multiple alignment methods for nucleotide and > +protein sequences. For

Re: [PATCH] gnu: pbr: Update to 1.6.0

2015-09-07 Thread Andreas Enge
This looks harmless to push, if you checked that the dependent python-oslotest still builds. Andreas

Re: [PATCH] Update IcedTea.

2015-09-07 Thread Andreas Enge
Hi Ricardo, do you have an answer to the question below? On Wed, Jul 22, 2015 at 07:33:56PM +0200, Andreas Enge wrote: > > I would also like to suggest changing the names ‘icedtea6’ and > > ‘icedtea7’ to just ‘icedtea’. They cannot be installed into the same > > profile anyway and users will mos

Re: [PATCH] Update IcedTea.

2015-09-07 Thread Ricardo Wurmus
Andreas Enge writes: > On Wed, Jul 22, 2015 at 07:33:56PM +0200, Andreas Enge wrote: >> > I would also like to suggest changing the names ‘icedtea6’ and >> > ‘icedtea7’ to just ‘icedtea’. They cannot be installed into the same >> > profile anyway and users will most likely want the latest versi

Re: [PATCH] Update IcedTea.

2015-09-07 Thread Andreas Enge
On Mon, Sep 07, 2015 at 11:27:26AM +0200, Ricardo Wurmus wrote: > The only reason why I added icedtea7 and kept icedtea6 was that I > previously did not know that icedtea7 could be bootstrapped with GCJ. > In the first attempt to get icedtea7 to compile I used icedtea6 to build > it. Now that this

Re: [PATCH 1/2] gnu: glibc/linux: Rename "linux-headers" input to "kernel-headers".

2015-09-07 Thread Manolis Ragkousis
Updated all the files referring to linux-headers in gnu/packages. The part of the patch referring to glibc/hurd was kept out, as there is no glibc/hurd in master. Is it okay to push it to core-updates? From b5d724cae502e8bf664b71045f4053e6d35a98df Mon Sep 17 00:00:00 2001 From: Manolis Ragkousis

Re: Ilmbase and openexr header files

2015-09-07 Thread Ludovic Courtès
Andreas Enge skribis: > the openexr package has ilmbase as a propagated input, since the openexr > header files include ilmbase header files. However, there is a problem with > subdirectories, since both packages put the include files into > .../include/OpenEXR. > > Then, for instance, > > /g

Re: [PATCH] Add gMTP.

2015-09-07 Thread Ludovic Courtès
Ricardo Wurmus skribis: > From 83997a0d8783395d0307498d3b7c32b0de9fb404 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Sun, 6 Sep 2015 23:07:10 +0200 > Subject: [PATCH] gnu: Add gMTP. > > * gnu/packages/libusb.scm (gmtp): New variable. [...] > +(description "gMTP is a simple graph

Re: Ilmbase and openexr header files

2015-09-07 Thread Andreas Enge
On Mon, Sep 07, 2015 at 02:03:17PM +0200, Ludovic Courtès wrote: > This shouldn’t be a problem because: > --8<---cut here---start->8--- > $ pkg-config OpenEXR --cflags > -pthread > -I/gnu/store/bnp4nsy7v4lzw562k4v7w34jdg8vkc3s-openexr-2.2.0/include/OpenEXR > -I

Re: [PATCHES] Add ruby-pg and adjust Ruby build system

2015-09-07 Thread Thompson, David
On Sun, Sep 6, 2015 at 5:34 PM, Ludovic Courtès wrote: > David Thompson skribis: > >> From 8f29026d37a66d8bcbddc6f32a6354d93d40f50d Mon Sep 17 00:00:00 2001 >> From: David Thompson >> Date: Sat, 29 Aug 2015 21:55:12 -0400 >> Subject: [PATCH 1/2] build: ruby: Avoid long build directory names. >>

Re: Texinfo in descriptions?

2015-09-07 Thread Alex Kost
Ludovic Courtès (2015-09-07 00:31 +0300) wrote: > Alex Kost skribis: > >> Ludovic Courtès (2015-09-06 16:51 +0300) wrote: >> >>> Alex: We should maybe disable the paragraph filling code in guix.el so >>> that it doesn’t mess up with formatting? >> >> I don't mind (if you remember I didn't actuall

Re: Ilmbase and openexr header files

2015-09-07 Thread Ludovic Courtès
Andreas Enge skribis: > On Mon, Sep 07, 2015 at 02:03:17PM +0200, Ludovic Courtès wrote: >> This shouldn’t be a problem because: >> --8<---cut here---start->8--- >> $ pkg-config OpenEXR --cflags >> -pthread >> -I/gnu/store/bnp4nsy7v4lzw562k4v7w34jdg8vkc3s-open

Re: Texinfo in descriptions?

2015-09-07 Thread Ludovic Courtès
Alex Kost skribis: > Ludovic Courtès (2015-09-07 00:31 +0300) wrote: > >> Alex Kost skribis: >> >>> Ludovic Courtès (2015-09-06 16:51 +0300) wrote: >>> Alex: We should maybe disable the paragraph filling code in guix.el so that it doesn’t mess up with formatting? >>> >>> I don't mind (

Re: [PATCH] gnu: Add ruby-byebug.

2015-09-07 Thread Ludovic Courtès
David Thompson skribis: > From a0a69a802b1d26bf91a663c0d5a0afde510ce5f0 Mon Sep 17 00:00:00 2001 > From: David Thompson > Date: Fri, 4 Sep 2015 15:09:30 -0400 > Subject: [PATCH] gnu: Add ruby-byebug. > > * gnu/packages/ruby.scm (ruby-byebug): New variable. LGTM, thanks. Ludo'.

Re: [PATCH] gnu: Add ruby-rack.

2015-09-07 Thread Ludovic Courtès
David Thompson skribis: > From a740a5ca98c02bd0e9c792677dfc8ff8464c8365 Mon Sep 17 00:00:00 2001 > From: David Thompson > Date: Fri, 4 Sep 2015 16:47:52 -0400 > Subject: [PATCH] gnu: Add ruby-rack. > > * gnu/packages/ruby.scm (ruby-rack): New variable. [...] > + (add-before 'check 'fix

Re: [PATCH] build: container: Setup /dev/console.

2015-09-07 Thread Ludovic Courtès
David Thompson skribis: > From dc797eb8e306655b10bd466d64ef5deaf428259f Mon Sep 17 00:00:00 2001 > From: David Thompson > Date: Sat, 1 Aug 2015 13:54:40 -0400 > Subject: [PATCH] build: container: Setup /dev/console. > > * gnu/build/linux-container.scm (mount-file-systems): Bind mount the > con

Re: [PATCH] build: container: Use the same clone flags as fork(3).

2015-09-07 Thread Ludovic Courtès
David Thompson skribis: > This patch resolves an issue I was having when working with containers > at the REPL, which means it probably presented undetected issues > elsewhere. Calling ‘primitive-fork’ at the REPL is not very useful anyway since you end up with two Guiles trying to read from the

Re: [PATCH] build: container: Setup /dev/console.

2015-09-07 Thread Thompson, David
On Mon, Sep 7, 2015 at 12:03 PM, Ludovic Courtès wrote: > David Thompson skribis: > >> From dc797eb8e306655b10bd466d64ef5deaf428259f Mon Sep 17 00:00:00 2001 >> From: David Thompson >> Date: Sat, 1 Aug 2015 13:54:40 -0400 >> Subject: [PATCH] build: container: Setup /dev/console. >> >> * gnu/buil

Re: [PATCH] build: container: Use the same clone flags as fork(3).

2015-09-07 Thread Thompson, David
On Mon, Sep 7, 2015 at 12:13 PM, Ludovic Courtès wrote: > David Thompson skribis: > >> This patch resolves an issue I was having when working with containers >> at the REPL, which means it probably presented undetected issues >> elsewhere. > > Calling ‘primitive-fork’ at the REPL is not very usef

Re: [PATCH] gnu: Add ruby-rack.

2015-09-07 Thread Thompson, David
On Mon, Sep 7, 2015 at 12:02 PM, Ludovic Courtès wrote: > David Thompson skribis: > >> From a740a5ca98c02bd0e9c792677dfc8ff8464c8365 Mon Sep 17 00:00:00 2001 >> From: David Thompson >> Date: Fri, 4 Sep 2015 16:47:52 -0400 >> Subject: [PATCH] gnu: Add ruby-rack. >> >> * gnu/packages/ruby.scm (rub

Re: (Geiser or guile bug) Guix-daemon output is missing

2015-09-07 Thread Alex Kost
Ludovic Courtès (2015-09-07 00:28 +0300) wrote: > Alex Kost skribis: > >> Now the bug itself: >> >> 1. Start Geiser (M-x run-guile) >> >> 2. Make a scheme buffer and evaluate (use-modules (guix scripts build)) >>there using "C-x C-e" or "C-M-x" (or any other "geiser-eval-…" >>command). T

Re: [PATCH] gnu: pbr: Update to 1.6.0

2015-09-07 Thread Cyril Roelandt
On 09/07/2015 11:07 AM, Andreas Enge wrote: > This looks harmless to push, if you checked that the dependent > python-oslotest still builds. > Pushed in ea8e40d031c3295805dc9357098c2c13aa516e1a . Cyril.

Re: [PATCH 0/2] Add oslo.i18n

2015-09-07 Thread Cyril Roelandt
On 09/02/2015 01:04 AM, Cyril Roelandt wrote: > These patches add oslo.i18n, a library that is part of Oslo. > > Cyril Roelandt (2): > gnu: python-testtools: fix propagated inputs. > gnu: Add oslo.i18n. > Pushed both patches in 05de40c5d342232fae86e7839baec1ebffeac022 and 8531b326f166403298

[PATCH 2/3] gnu: Add python-stevedore.

2015-09-07 Thread Cyril Roelandt
* gnu/packages/openstack.scm (python-stevedore, python2-stevedore): New variables. --- gnu/packages/openstack.scm | 43 +++ 1 file changed, 43 insertions(+) diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index 1641476..e5ba867 100644

[PATCH 3/3] gnu: Add python-oslo.config.

2015-09-07 Thread Cyril Roelandt
* gnu/packages/openstack.scm (python-oslo.config, python2-oslo.config): New variables. --- gnu/packages/openstack.scm | 37 + 1 file changed, 37 insertions(+) diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm index e5ba867..dc30207 100644 --

[PATCH 0/3] Add oslo.config.

2015-09-07 Thread Cyril Roelandt
These three patches add oslo.config. Cyril Roelandt (3): gnu: Add python-netaddr. gnu: Add python-stevedore. gnu: Add python-oslo.config. gnu/packages/openstack.scm | 80 ++ gnu/packages/python.scm| 28 2 files changed, 108 i

[PATCH 1/3] gnu: Add python-netaddr.

2015-09-07 Thread Cyril Roelandt
* gnu/packages/python.scm (python-netaddr, python2-netaddr): New variables. --- gnu/packages/python.scm | 28 1 file changed, 28 insertions(+) diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index f9ad951..0231bce 100644 --- a/gnu/packages/python.scm ++

Re: [PATCH] gnu: pbr: Update to 1.6.0

2015-09-07 Thread Cyril Roelandt
On 09/07/2015 11:07 AM, Andreas Enge wrote: > This looks harmless to push Btw, is it OK to directly push such changes? I feel like they usually pollute the mailing list more than anything else :/ Cyril.

Should we start a Guix users wiki?

2015-09-07 Thread Craig Barnes
Hi Guix, Some time ago I asked on IRC about a guix users wiki. Someone suggest that I propose one here (sorry it's taken so long). I think that a wiki would be a good complement to the manual, which while quite complete, lacks exhaustive examples (which would be impractical). I have found mysel

[PATCH] build: ruby: Add support for tarball and directory sources.

2015-09-07 Thread David Thompson
>From 612a4a692375f241934de03d24064dbef1c7294c Mon Sep 17 00:00:00 2001 From: David Thompson Date: Mon, 7 Sep 2015 22:58:05 -0400 Subject: [PATCH] build: ruby: Add support for tarball and directory sources. Previously, the Ruby build system only knew how to work with gem archives, which made it d