On Tue, May 03, 2016 at 12:38:44AM +0200, Jan Nieuwenhuizen wrote:
> Leo Famulari writes:
> > On Wed, Apr 27, 2016 at 09:05:26PM +0200, Jan Nieuwenhuizen wrote:
> >> Yes. Moved python to inputs, added python wrapper.
> >
> > Cool!
>
> :-) Thanks
>
> > Based on that, I moved python2-gobject into
Current poppler is 0.42.0 in gnome- updates, I think when merge back into
master, with conflict resolved it will undo the graft. Do you mean we resolve
it explicitly in gnome-updates? That's better, thanks! And perhaps we could
update it to the lastest 0.43.0?
On 03/05/16 00:49, Ricardo Wurmus wrote:
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
---
gnu/packages/bioinformatics.scm | 21 +
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7d025
Attached is a patch to update i3status to 2.10.
The Makefile runs "setcap cap_net_admin=ep
$(DESTDIR)$(PREFIX)/bin/i3status)", which wasn't working in the prior
version, either. It makes the "%speed" element of the "ethernet" module
functional. I'm not sure how to handle that one. The package is
Leo Famulari writes:
> On Wed, Apr 27, 2016 at 09:05:26PM +0200, Jan Nieuwenhuizen wrote:
>> Yes. Moved python to inputs, added python wrapper.
>
> Cool!
:-) Thanks
> Based on that, I moved python2-gobject into (inputs). I also tried
> removing mutter entirely, since I believe mutter is provid
On Wed, Apr 27, 2016 at 09:05:26PM +0200, Jan Nieuwenhuizen wrote:
> Yes. Moved python to inputs, added python wrapper.
Cool!
Based on that, I moved python2-gobject into (inputs). I also tried
removing mutter entirely, since I believe mutter is provided by
gnome-shell.
It seems to work for me.
Everything works on my end. Would someone else like to test this patch?
0001-gnu-Add-moc.patch
Description: Binary data
pgpX2VJzm8FRY.pgp
Description: OpenPGP digital signature
Am 02.05.2016 um 10:24 schrieb Ludovic Courtès:
> Nice work!
Thanks.
> Would be great to have it integrated in ‘guix import’. Did you look at
> the other importers in guix/import/*.scm? Hopefully it should be simple
> enough to do the same within this framework, even without being a
> die-hard S
On Sun, May 01, 2016 at 03:21:47PM +0200, Ludovic Courtès wrote:
> Leo Famulari skribis:
>
> > There is a new stable release of Nginx: 1.10.0:
> >
> > http://nginx.org/en/download.html
> >
> > Take a look at the changes to see if there are any new features we
> > should enable. HTTP/2? The change
Andy Wingo writes:
>> * gnu/packages/patches/readline-6.3-mingw.patch: New file.
>> * gnu-system.am (dist_patch_DATA): Add it.
>> * gnu/packages/readline.scm (readline): Support mingw.
>
> Can you clarify the licensing on the patch, and note its original
> author? Ideally we should send the patch
On Mon, May 02, 2016 at 10:37:06AM +0200, Ludovic Courtès wrote:
> Leo Famulari skribis:
>
> > $ gnome-maps
> > ** (org.gnome.Maps:14112): WARNING **: Failed to load shared library
> > 'libgoa-1.0.so.0' referenced by the typelib: libgoa-1.0.so.0: cannot open
> > shared object file: No such file
On Wed, Apr 27, 2016 at 12:47:40AM +0200, Roel Janssen wrote:
> * gnu/packages/databases.scm (4store): New variable.
> * gnu/packages/patches/4store-fix-buildsystem.patch: New file.
> * gnu/local.mk (dist_patch_DATA): Add patch file entry.
Applied as 4c6aa73b8f9.
Thanks for your work on this!
>
Andy Wingo writes:
>>(arguments `(#:configure-flags
>> (list (string-append "LDFLAGS=-Wl,-rpath -Wl,"
>> (assoc-ref %build-inputs "ncurses")
>> -"/lib")
>> +
Leo Famulari writes:
> On Mon, May 02, 2016 at 04:49:21PM +0200, Ricardo Wurmus wrote:
>> * gnu/packages/bioinformatics.scm (r-centipede): New variable.
>
>> +(synopsis "Predict transcription factor binding sites")
>
> And here I thought it would be a centipede genome ;)
>
>> +(license (
On Mon, May 02, 2016 at 04:49:21PM +0200, Ricardo Wurmus wrote:
> * gnu/packages/bioinformatics.scm (r-centipede): New variable.
> +(synopsis "Predict transcription factor binding sites")
And here I thought it would be a centipede genome ;)
> +(license (list license:gpl2+ license:gpl3+))
On Mon, May 02, 2016 at 10:47:16PM +0800, 宋文武 wrote:
> Thanks for the review.
> I have rebase it upon master again with the one log change but
> leave out the poppler CVE-2015-8868 fix (it's in 0.42.0) in master.
> (I can't use force push so I delete and push it again..)
I'm just joining this conv
Andy Wingo writes:
> On Fri 29 Apr 2016 17:12, Jan Nieuwenhuizen writes:
>
>> @@ -36,6 +39,7 @@
>> #:allow-other-keys)
>> (let ((out (assoc-ref outputs "out"))
>>(doc (assoc-ref outputs "doc")))
>> + (format #t "configure flags: ~
On Mon, May 02, 2016 at 09:34:34AM -0400, Mark H Weaver wrote:
> Leo Famulari writes:
> > Core-updates was suggested on IRC. This would mean that after each graft
> > commit, master would need to be merged into core-updates, and then the
> > "ungrafting" patch could be applied.
> In practice, thi
Andy Wingo writes:
> On Fri 29 Apr 2016 17:12, Jan Nieuwenhuizen writes:
>
>> @@ -288,7 +379,11 @@ GCC that does not target a libc; otherwise, target that
>> libc."
>> (xbinutils (cross-binutils target)))
>>"Return a libc cross-built for TARGET, a GNU triplet. Use XGCC
On Mon, May 02, 2016 at 09:50:43AM +0200, Ludovic Courtès wrote:
> FWIW, until recently Nixpkgs didn’t use multiple outputs much (info
> "(guix) Packages with Multiple Outputs"). Lately they merged a change
> to use them very aggressively. So for instance, GNU libidn, which takes
> 800 KiB in tot
On Mon, May 02, 2016 at 10:18:25AM +0200, Ludovic Courtès wrote:
> Leo Famulari skribis:
>
> > * gnu/packages/patches/ocaml-CVE-2015-8869.patch: New file.
> > * gnu/local.mk (dist_patch_DATA): Add it.
> > * gnu/packages/ocaml.scm (ocaml): Use it.
>
> LGTM, thanks!
Applied as 3854f3d7e4c, with a
Andy Wingo writes:
[cc: Ludovic]
> On Fri 29 Apr 2016 17:12, Jan Nieuwenhuizen writes:
>
>> * gnu/packages/patches/gcc-cross-environment-variables.patch: Also use CROSS_
>> variants: CROSS_C_INCLUDE_PATH, CROSS_CPLUS_INCLUDE_PATH,
>> CROSS_OBJC_INCLUDE_PATH, CROSS_OBJCPLUS_INCLUDE_PATH to be use
Leo Famulari writes:
> On Wed, Apr 27, 2016 at 09:31:20PM +0200, Ricardo Wurmus wrote:
>> these patches add MIDI support to Frescobaldi via portmidi. I took a
>> patch from Gentoo to break apart the portmidi build, so that we can
>> disable the Java parts and cleanly disable the tests which fai
Mark H Weaver skribis:
> Leo Famulari writes:
>
>> When committing a bug fix with a graft, I think it would be a good idea
>> to follow up on some other branch with a commit that makes the same
>> change without a graft.
>>
>> Core-updates was suggested on IRC. This would mean that after each gr
Ricardo Wurmus skribis:
> I’ve submitted a patch to the mailing list (this time inline with “git
> send-mail”) and it appeared in the list. Is there any way for us to
> mark patches as committed via email (e.g. by commenting with something
> like “Pushed as cabba9e.”) or does patchwork figure th
Ludovic Courtès writes:
> Ricardo Wurmus skribis:
>
>> Ludovic Courtès writes:
>>
>>> Ricardo Wurmus skribis:
>>>
I tested JUnit previously with the log4j-api package, but I cannot
submit this right now due to a bug(?) in Guile’s HTTP client, which
makes it impossible for me to
Hi Rob,
> A guix-friendly licensed variant caller.
>
> From 78fb1be26ca1a0ac768ce5b98f7fd9f467870b84 Mon Sep 17 00:00:00 2001
> From: Rob Syme
> Date: Mon, 2 May 2016 16:46:53 +0800
> Subject: [PATCH] gnu: Add freebayes
>
> * gnu/packages/bioinformatics.scm (freebayes): New variable.
>
> ---
th
Ludovic Courtès writes:
> Hello Guix!
>
> Thanks to Siddhesh Poyarekar of glibc & co., Guix patches can now be
> tracked on this Patchwork instance:
>
> http://patchwork.sourceware.org/project/guix/list/
Thanks!
> Actions can be taken on the Web interface, provided you have an account
> ther
Hello Guix!
Thanks to Siddhesh Poyarekar of glibc & co., Guix patches can now be
tracked on this Patchwork instance:
http://patchwork.sourceware.org/project/guix/list/
Actions can be taken on the Web interface, provided you have an account
there (I think anyone can create an account on this Pa
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
---
gnu/packages/bioinformatics.scm | 21 +
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7d025ef..d7957cf 100644
--- a/gnu/packages/bioinform
l...@gnu.org (Ludovic Courtès) writes:
> Hello!
>
> iyzs...@member.fsf.org (宋文武) skribis:
>
>> - Disable a failing rtprtx test of gst-plugins-good.
>> I can pass it using `guix environment', but fail with `guix build'.
>
> The log for this commit contains a typo: it doesn’t mention the variable
On 02/05/16 18:57, Ricardo Wurmus wrote:
* gnu/packages/statistics.scm (r-xnomial): New variable.
LGTM
ben
Leo Famulari writes:
> When committing a bug fix with a graft, I think it would be a good idea
> to follow up on some other branch with a commit that makes the same
> change without a graft.
>
> Core-updates was suggested on IRC. This would mean that after each graft
> commit, master would need t
On Tue, Apr 26, 2016 at 01:22:33PM +0300, Alex Kost wrote:
> > + (name "redeclipse")
> I would name the package "red-eclipse", but it probably doesn't matter.
That would be in line with our package naming guidelines: replace everything
that is not [A-Za-z0-9] by a '-'. Do you think we could s
l...@gnu.org (Ludovic Courtès) writes:
> Ricardo Wurmus skribis:
>
>> Leo Famulari writes:
>>
>>> On Fri, Apr 29, 2016 at 06:31:24PM +, alírio eyng wrote:
Ludovic Courtès:
>what about multiple-language packages? I’m thinking of
>‘c+guile-guile’ and ‘c+siod+python-gimp’.
A guix-friendly licensed variant caller.
>From 78fb1be26ca1a0ac768ce5b98f7fd9f467870b84 Mon Sep 17 00:00:00 2001
From: Rob Syme
Date: Mon, 2 May 2016 16:46:53 +0800
Subject: [PATCH] gnu: Add freebayes
* gnu/packages/bioinformatics.scm (freebayes): New variable.
---
gnu/packages/bioinformatics.
Ben Woodcroft writes:
> On 02/05/16 18:57, Ricardo Wurmus wrote:
>> * gnu/packages/statistics.scm (r-xnomial): New variable.
> LGTM
> ben
Thanks. Pushed as b74f64a960542b0679ab13de0dd28adc496cf084.
~~ Ricardo
* gnu/packages/statistics.scm (r-xnomial): New variable.
---
gnu/packages/statistics.scm | 28
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 2178984..3d0faf7 100644
--- a/gnu/packages/statistics.scm
+++ b
Leo Famulari skribis:
> $ gnome-maps
> ** (org.gnome.Maps:14112): WARNING **: Failed to load shared library
> 'libgoa-1.0.so.0' referenced by the typelib: libgoa-1.0.so.0: cannot open
> shared object file: No such file or directory
It says “warning”, but that’s probably a significant issue sin
Leo Famulari skribis:
> * gnu/packages/glib.scm (telepathy-glib)[arguments]: Add
> --enable-vala-bindings
> to #:configure-flags.
> [native-inputs]: Add vala.
If it does not increase the closure size, fine with me!
Leo Famulari skribis:
> * gnu/packages/gnome.scm (evolution-data-server)[arguments]: Add
> --enable-vala-bindings to #:configure-flags.
> [native-inputs]: Add vala.
LGTM.
Leo Famulari skribis:
> * gnu/packages/gnome.scm (libchamplain): Update to 0.12.13.
OK!
Leo Famulari skribis:
> * gnu/packages/gnome.scm (libchamplain)[native-inputs]: Add
> gobject-introspection, vala.
> [arguments]: New field.
Does it increase the closure size? If not, LGTM.
Ludo’.
Leo Famulari skribis:
> * gnu/packages/gnome.scm (vala)[arguments]: Pass --enable-apigen
> to #:configure-flags.
LGTM; I think this could go right now in ‘gnome-updates’. :-)
Ludo’.
Leo Famulari skribis:
> * gnu/packages/gnome.scm (folks): New variable.
Please make sure to check whether the result includes auto-generated
HTML docs, which usually takes up quite some space, and move it to a
“doc” output if it does.
Otherwise LGTM, thank you!
Ludo’.
Ludovic Courtès writes:
> Ben Woodcroft skribis:
>
>> On 28/04/16 18:24, Ludovic Courtès wrote:
>>> l...@gnu.org (Ludovic Courtès) skribis:
>>>
As an experiment (it may disappear anytime), I generated the
‘patches.json’ file for “patches”, so you can now run:
guix package
Hello!
Hartmut Goebel skribis:
> based on a former short discussion [1] I implemented a Pyhton tool which
> helps generating package definitions from Debian descriptions.
>
> Comments and enhancements are *very* welcome.
>
> Installation:
>
>pip install guix-import-debian
>
> :Homepage: http
Leo Famulari skribis:
> * gnu/packages/patches/ocaml-CVE-2015-8869.patch: New file.
> * gnu/local.mk (dist_patch_DATA): Add it.
> * gnu/packages/ocaml.scm (ocaml): Use it.
LGTM, thanks!
Ludo'.
Hello!
iyzs...@member.fsf.org (宋文武) skribis:
> - Disable a failing rtprtx test of gst-plugins-good.
> I can pass it using `guix environment', but fail with `guix build'.
The log for this commit contains a typo: it doesn’t mention the variable
name, only the ‘arguments’ field. Also, could you
On Fri 29 Apr 2016 17:12, Jan Nieuwenhuizen writes:
> * gnu/packages/patches/readline-6.3-mingw.patch: New file.
> * gnu-system.am (dist_patch_DATA): Add it.
> * gnu/packages/readline.scm (readline): Support mingw.
Can you clarify the licensing on the patch, and note its original
author? Ideall
On Fri 29 Apr 2016 17:12, Jan Nieuwenhuizen writes:
> @@ -36,6 +39,7 @@
> #:allow-other-keys)
> (let ((out (assoc-ref outputs "out"))
>(doc (assoc-ref outputs "doc")))
> + (format #t "configure flags: ~s~%" configure-flags)
>
On Fri 29 Apr 2016 17:12, Jan Nieuwenhuizen writes:
> @@ -288,7 +379,11 @@ GCC that does not target a libc; otherwise, target that
> libc."
> (xbinutils (cross-binutils target)))
>"Return a libc cross-built for TARGET, a GNU triplet. Use XGCC and
> XBINUTILS and the c
On Fri 29 Apr 2016 17:12, Jan Nieuwenhuizen writes:
> * gnu/packages/patches/gcc-cross-environment-variables.patch: Also use CROSS_
> variants: CROSS_C_INCLUDE_PATH, CROSS_CPLUS_INCLUDE_PATH,
> CROSS_OBJC_INCLUDE_PATH, CROSS_OBJCPLUS_INCLUDE_PATH to be used for system
> libraries, see
> https://l
Leo Famulari skribis:
> On Fri, Apr 29, 2016 at 06:35:43PM -0500, Christopher Allan Webber wrote:
>> * gnu/packages/emacs.scm (geiser-next): New variable.
>
>> +(version "20160428.4c8b3de")
>
> Looks good, but can you make the version string in the style described
> in 7.6.3 Version Numbers?
Ricardo Wurmus skribis:
> Leo Famulari writes:
>
>> On Fri, Apr 29, 2016 at 06:31:24PM +, alírio eyng wrote:
>>> Ludovic Courtès:
>>> >what about multiple-language packages? I’m thinking of
>>> >‘c+guile-guile’ and ‘c+siod+python-gimp’.
>>> the ideal categorization would be one output for e
Leo Famulari writes:
> On Wed, Apr 27, 2016 at 12:47:40AM +0200, Roel Janssen wrote:
>> * gnu/packages/databases.scm (4store): New variable.
>> * gnu/packages/patches/4store-fix-buildsystem.patch: New file.
>> * gnu/local.mk (dist_patch_DATA): Add patch file entry.
>
>> +(version "1.1.6")
>
>
On Mon, May 02, 2016 at 08:02:23AM +0200, Ricardo Wurmus wrote:
> How do other distributions handle this? Do they backport fixes to Qt 4?
It looks like the Qt 4 repo has received some security updates, but
their policy on supporting old releases seems to be "maybe":
https://code.qt.io/cgit/qt/qt
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