Congratulations!
Nope, not as root. I haven't run 'guix package -i guix' as a regular
user so the links to the Guix info manual aren't in my
".guix-profile/" directory.
2015-10-01 6:29 GMT-03:00 Ricardo Wurmus :
>
> Vicente Vera writes:
>
>> I am too using Guix solel
I am too using Guix solely as a package manager. To open the Guix Info
manual in Emacs i use 'C-u C-h i' and go to the shortest path to find
the manual, which would be '/root/.guix-profile/share/info/'.
Hello,
Here are two patches that add R packages data.table and chron.
Hope both synopsis and descriptions are OK!
Thank you for everything.
From 27c21038d0a23910ad3bc176c402a39008089049 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sat, 26 Sep 2015 23:54:08 -0300
Subject: [PATCH 1/2
Thanks, I get it now. Nice idea that of the Git repo symlink.
2015-09-20 22:02 GMT-03:00 宋文武 :
> 2015-09-21 2:45 GMT+08:00 Vicente Vera :
>> Hello.
>>
>> After running 'guix pull' (as root) with a fresh binary installation
>> directory ~root/.config/guix/
Thank you for your patience too!
2015-09-21 5:57 GMT-03:00 Ricardo Wurmus :
> Hi Vicente,
>
> I just pushed all your patches with some modifications:
>
> * changed the ‘uri’ field to use the new ‘(cran-uri ...)’ procedure
> * updated a couple of packages to their latest versions
> * changed the sy
Hello.
After running 'guix pull' (as root) with a fresh binary installation
directory ~root/.config/guix/ was created, which contains a "latest"
symlink pointing to /gnu/store/...-guix-latest/.
Since I work as a regular user, I noticed that Guix wasn't picking up
changes from the updated distribu
Hello Ricardo,
I'm sorry for the home-page and synopsis in separate lines; truly bad
choice there since every patch has the same issue. If you don't mind I
could upload corrected versions.
Thank you for the observations and corrections.
2015-09-16 7:03 GMT-03:00 Ricardo Wurmus :
> Hi Vicente,
>
Updated patch attached.
2015-09-13 13:56 GMT-03:00 Vicente Vera :
>
From cb3a4a5ada258b8ae7ff1850f0b69ff14cae9766 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:25:14 -0300
Subject: [PATCH 19/19] gnu: Add r-dplyr.
* gnu/packages/statistics.scm (r-dplyr):
Updated patch attached.
2015-09-13 13:56 GMT-03:00 Vicente Vera :
>
From 9ca87e430f334c453199339001f93e14f23a28bc Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:24:46 -0300
Subject: [PATCH 18/19] gnu: Add r-r6.
* gnu/packages/statistics.scm (r-r6): New varia
Updated patch attached.
2015-09-13 13:55 GMT-03:00 Vicente Vera :
>
From 3be96f6cf9758dc701647c19f2e6f16a8a23f98f Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:24:17 -0300
Subject: [PATCH 17/19] gnu: Add r-testthat.
* gnu/packages/statistics.scm (r-testthat):
Updated patch attached.
2015-09-13 13:54 GMT-03:00 Vicente Vera :
>
From de5cfb321fddcae013ca3ddd38f51385e54b71d7 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:23:46 -0300
Subject: [PATCH 16/19] gnu: Add r-crayon.
* gnu/packages/statistics.scm (r-crayon):
Updated patch attached.
2015-09-13 13:53 GMT-03:00 Vicente Vera :
>
From 6e1c3b2598da36af3a1c34af1b9a48df865d6711 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:23:07 -0300
Subject: [PATCH 15/19] gnu: Add r-memoise.
* gnu/packages/statistics.scm (r-memoise):
Updated patch attached.
2015-09-13 13:53 GMT-03:00 Vicente Vera :
>
From e4567ed67528258ceff06d43fdbbb0248c6acc2d Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:22:35 -0300
Subject: [PATCH 14/19] gnu: Add r-pryr.
* gnu/packages/statistics.scm (r-pryr): New varia
Updated patch attached.
2015-09-13 13:52 GMT-03:00 Vicente Vera :
>
From e7acdd3768577c18b2f2141f509c0eb7f244cdf3 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:21:19 -0300
Subject: [PATCH 13/19] gnu: Add r-codetools.
* gnu/packages/statistics.scm (r-codetools):
Updated patch attached.
2015-09-13 13:52 GMT-03:00 Vicente Vera :
>
From dd1275eb089b0fd5e95563b40864098a4e05cba8 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:20:47 -0300
Subject: [PATCH 12/19] gnu: Add r-microbenchmark.
* gnu/packages/statistics.scm
Updated patch attached.
2015-09-14 17:06 GMT-03:00 Vicente Vera :
> Hello,
>
> I'm not sure if it's correct, but I changed the license from gpl3+ to
> gpl2+ to keep it consistent with the r-markdown package
> (https://www.gnu.org/licenses/gpl-faq.html#v2v3Compatibilit
Updated patch attached.
2015-09-13 13:51 GMT-03:00 Vicente Vera :
>
From 05faef5307e8b6c8e7e7aed0ec79a6b8bd6d18bf Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:19:33 -0300
Subject: [PATCH 10/19] gnu: Add r-yaml.
* gnu/packages/statistics.scm (r-yaml): New varia
Updated patch attached.
2015-09-14 16:59 GMT-03:00 Vicente Vera :
> Hello Ricardo,
>
> Both the code and the comment related to the check phase were changed.
> Indeed, the comment was pretty much unreadable. Hope the new one is
> better.
>
> New patch attached.
>
>
Updated patch attached.
2015-09-13 13:48 GMT-03:00 Vicente Vera :
>
From 3ca3843cd2fb34d254cd5930b70283136e0f91ea Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:17:50 -0300
Subject: [PATCH 07/19] gnu: Add r-highr.
* gnu/packages/statistics.scm (r-highr):
Updated patch attached.
2015-09-13 13:49 GMT-03:00 Vicente Vera :
>
From d77ac349efa78e0efe098382f4e089d7dcd0fe43 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:18:25 -0300
Subject: [PATCH 08/19] gnu: Add r-mime.
* gnu/packages/statistics.scm (r-mime): New varia
Updated patch attached.
2015-09-13 13:47 GMT-03:00 Vicente Vera :
>
From e34df1d5c9e894d10caec9f05421a7a61907c600 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Tue, 15 Sep 2015 14:16:47 -0300
Subject: [PATCH 06/19] gnu: Add r-formatr.
* gnu/packages/statistics.scm (r-formatr):
Updated patch attached.
2015-09-14 16:47 GMT-03:00 Vicente Vera :
> Hi,
>
> Sure, once the upgraded package is available at CRAN the corresponding
> changes will be added. Thank you for the heads up.
>
> New patch attached.
>
> 2015-09-14 7:57 GMT-03:00 Ricardo Wurmus
Updated patch attached.
2015-09-14 16:43 GMT-03:00 Vicente Vera :
> Hello,
>
> I don't know if the boost package in the distribution could be used to
> comply with the requirements. IMO it is safer to incorporate r-bh as
> it is needed by dplyr.
>
> New patch with corr
Updated patch attached.
2015-09-14 16:35 GMT-03:00 Vicente Vera :
> New patch attached.
>
> 2015-09-14 7:46 GMT-03:00 Ricardo Wurmus :
>>
>> Vicente Vera writes:
>>
>>> * gnu/packages/statistics.scm (r-dbi): New variable.
>>
>> [...]
>>
>&
Updated patch attached.
2015-09-15 12:31 GMT-03:00 Vicente Vera :
> Hi,
>
> Glad to hear the patches helped!
>
> I've been fixing most of the issues (sentences with double spaces,
> long lines) in all the patches. If you don't mind the extra time, I'll
> atta
Updated patch attached.
2015-09-13 19:20 GMT-03:00 Vicente Vera :
> Hi Ricardo,
>
> CRAN importer? Hmm, just made a very useful discovery! I feel ashamed now.
>
> Attached goes the 1st patch with the modified copyright header and the
> fixed typo (actually, it came with the pack
Hi,
Glad to hear the patches helped!
I've been fixing most of the issues (sentences with double spaces,
long lines) in all the patches. If you don't mind the extra time, I'll
attach the corrected patches in the next hours.
2015-09-15 11:42 GMT-03:00 Ricardo Wurmus :
> Hi Vicente,
>
>> Actually,
mus :
> Hi Vicente,
>
>> From 36f94f07cba5edea4897ac36b92a73bfc6a3258b Mon Sep 17 00:00:00 2001
>> From: Vicente Vera Parra
>> Date: Sun, 13 Sep 2015 13:20:29 -0300
>> Subject: [PATCH 11/19] gnu: Add r-knitr.
>
>> * gnu/packages/statistics.scm (r-knitr): New
00:00:00 2001
>> From: Vicente Vera Parra
>> Date: Sun, 13 Sep 2015 13:17:39 -0300
>> Subject: [PATCH 09/19] gnu: Add r-markdown.
>
>> * gnu/packages/statistics.scm (r-markdown): New variable.
>
> [...]
>
>> +;; Skip check phase because the tests requi
ording to LICENSE on Github[1] this package is release under the
> “MIT” license (= Expat?) since version 0.7.3 (you packaged 0.7.2). This
> should be noted when you prepare a new patch and decide to upgrade to
> the latest version.
>
> ~~ Ricardo
From 068eccba79d8908a859c1b565a86d067
f Boost. Would it be possible to use the existing “boost”
> package in place of “r-bh”?
>
> If not: please use two spaces in the description. I think the first two
> sentences can be removed as they relate to the Boost library. Also,
> please use lower case for the synopsis.
>
>
New patch attached.
2015-09-14 7:46 GMT-03:00 Ricardo Wurmus :
>
> Vicente Vera writes:
>
>> * gnu/packages/statistics.scm (r-dbi): New variable.
>
> [...]
>
>> +(synopsis "R Database Interface")
>
> Please use lower case here.
>
>>
ription should be a little more explicit and should be a
> complete sentence. I do not know what an “approach” is in the context
> of an R package ;)
>
> ~~ Ricardo
From ebe1fc562203a8b884daae5c438820510002b642 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Mon, 14 Sep 2015 13:2
;
> s/you code/your code/
>
>> +while also producing friendly error messages so that your users know
>> +what they've done wrong.")
>
> ~~ Ricardo
>
From cdf4822e9c7578465ee97f0d2e23fdb80c135eee Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun,
From 3849213304d49776dadbae929fdd6830c1efbd40 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:30:35 -0300
Subject: [PATCH 19/19] gnu: Add r-dplyr.
* gnu/packages/statistics.scm (r-dplyr): New variable.
---
gnu/packages/statistics.scm | 27
From 362422f7bea0eba246b232edc8067e9a6c0fdbc4 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:28:06 -0300
Subject: [PATCH 17/19] gnu: Add r-testthat.
* gnu/packages/statistics.scm (r-testthat): New variable.
---
gnu/packages/statistics.scm | 21
From 11678514207e1fc5da04dca00d89ff9f67a67d2b Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:29:38 -0300
Subject: [PATCH 18/19] gnu: Add r-r6.
* gnu/packages/statistics.scm (r-r6): New variable.
---
gnu/packages/statistics.scm | 30 ++
1
From d2bf70d4effba6d1cd580704396522a385061d65 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:26:29 -0300
Subject: [PATCH 16/19] gnu: Add r-crayon.
* gnu/packages/statistics.scm (r-crayon): New variable.
---
gnu/packages/statistics.scm | 23
From 0052b4aa565990853273605c809da3b983f34488 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:25:37 -0300
Subject: [PATCH 15/19] gnu: Add r-memoise.
* gnu/packages/statistics.scm (r-memoise): New variable.
---
gnu/packages/statistics.scm | 20
1
From 13d1a1da76a4c21ea3b5c64f1e6fe60e82831f71 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:23:00 -0300
Subject: [PATCH 13/19] gnu: Add r-codetools.
* gnu/packages/statistics.scm (r-codetools): New variable.
---
gnu/packages/statistics.scm | 17
From a8d92cf3a932464e8bb22a276ab897515bfd31d8 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:24:04 -0300
Subject: [PATCH 14/19] gnu: Add r-pryr.
* gnu/packages/statistics.scm (r-pryr): New variable.
---
gnu/packages/statistics.scm | 22 ++
1
From 51d863a23b7caf986d6e52bb2ab84a2afee12cf4 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:22:10 -0300
Subject: [PATCH 12/19] gnu: Add r-microbenchmark.
* gnu/packages/statistics.scm (r-microbenchmark): New variable.
---
gnu/packages/statistics.scm | 20
From 36f94f07cba5edea4897ac36b92a73bfc6a3258b Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:20:29 -0300
Subject: [PATCH 11/19] gnu: Add r-knitr.
* gnu/packages/statistics.scm (r-knitr): New variable.
---
gnu/packages/statistics.scm | 26
From ee26c1bf10c330562b6947e0a87ece10037f9634 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:19:13 -0300
Subject: [PATCH 10/19] gnu: Add r-yaml.
* gnu/packages/statistics.scm (r-yaml): New variable.
---
gnu/packages/statistics.scm | 18 ++
1 file
From 7e291c7f87498368be556941f6eb7315f94a7c74 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:17:39 -0300
Subject: [PATCH 09/19] gnu: Add r-markdown.
* gnu/packages/statistics.scm (r-markdown): New variable.
---
gnu/packages/statistics.scm | 30
From 0f996b4462257a5331681f7cb051e46a972d3381 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:15:41 -0300
Subject: [PATCH 08/19] gnu: Add r-mime.
* gnu/packages/statistics.scm (r-mime): New variable.
---
gnu/packages/statistics.scm | 18 ++
1 file
From bf82aef0064986fec2fa0a24a83aee20831f2d89 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:14:15 -0300
Subject: [PATCH 07/19] gnu: Add r-highr.
* gnu/packages/statistics.scm (r-highr): New variable.
---
gnu/packages/statistics.scm | 20
1
From e95da21a37d96a1eb8b427343ea50082398581a0 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:11:55 -0300
Subject: [PATCH 06/19] gnu: Add r-formatr.
* gnu/packages/statistics.scm (r-formatr): New variable.
---
gnu/packages/statistics.scm | 21
From c386e31fc1b2ae45c52a6a4314f6993498f3a76b Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:10:35 -0300
Subject: [PATCH 05/19] gnu: Add r-evaluate.
* gnu/packages/statistics.scm (r-evaluate): New variable.
---
gnu/packages/statistics.scm | 20
From 48779f00039194426bdd53acb81a29dc50994340 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:09:32 -0300
Subject: [PATCH 04/19] gnu: Add r-bh.
* gnu/packages/statistics.scm (r-bh): New variable.
---
gnu/packages/statistics.scm | 23 +++
1 file
From 7996c78eca1549a69cad643730ecc5c2750b53f3 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:05:48 -0300
Subject: [PATCH 02/19] gnu: Add r-lazyeval.
* gnu/packages/statistics.scm (r-lazyeval): New variable.
---
gnu/packages/statistics.scm | 17 +
1
From f6dfaeeedfb3f169e4a9aa1f67e98d45a2365a5f Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:07:34 -0300
Subject: [PATCH 03/19] gnu: Add r-dbi.
* gnu/packages/statistics.scm (r-dbi): New variable.
---
gnu/packages/statistics.scm | 20
1 file
From 3c84aed40d729a2de02e891fa43c1000cec6d602 Mon Sep 17 00:00:00 2001
From: Vicente Vera Parra
Date: Sun, 13 Sep 2015 13:03:01 -0300
Subject: [PATCH 01/19] gnu: Add r-assertthat.
* gnu/packages/statistics.scm (r-assertthat): New variable.
---
gnu/packages/statistics.scm | 20
Hi,
Just managed to define several new R packages which could be added to
the distribution. Basically it's just r-dplyr and its dependencies
(r-knitr, etc.).
Should I send a single patch for r-dplyr, or several patches, one for
each dependency (19)?
ng) type from "XLib"
to "cairo", once it gets called.
(just for the record, i'm not using GuixSD)
2015-09-03 11:55 GMT-03:00 Vicente Vera :
> Hi,
>
> Sure. The error message is this:
>
> X11 font -adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*, face 5 at size
>
Patch attached.
2015-09-09 17:19 GMT-03:00 Cyril Roelandt :
> On 09/09/2015 09:50 PM, Vicente Vera wrote:
>> Hello,
>> Right now installing r-ggplot2 fails because dependency r-scales can't
>> be found on CRAN mirrors:
>>
>> ERROR: download failed
>&
Messed up. It should say:
Current version of R package scales is 0.3.0. In Guix, version of
package r-scales is 0.2.5.
The output of 'guix download' shows the hash of the new "0.3.0"
version of scales.
2015-09-09 16:50 GMT-03:00 Vicente Vera :
> Hello,
> Right now
Hello,
Right now installing r-ggplot2 fails because dependency r-scales can't
be found on CRAN mirrors:
ERROR: download failed
"http://cran.../src/contrib/scales_0.2.5.tar.gz"; 404 "Not Found"
Current version of r-scales is "0.3.0".
'guix download' output:
starting download of `/tmp/guix-file.D
Hi,
Sure. The error message is this:
X11 font -adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*, face 5 at size
15 could not be loaded
No plot is being drawn; only a blank window appears.
The code:
ggplot(data = fig1, aes(x = Var1, y = Freq, fill =
brewer.pal(length(levels(the_data$VARIABLE1)), "Set
Hello,
Going back to the R dependencies topic, I ran across an issue when
trying to draw a plot (with ggplot2). But first some context:
- I'm not using GuixSD but a binary installation over Manjaro OpenRC;
several base packages missing on Guix
- I only have other two Guix packages installed: xpdf
out some undefined locales but I'll check that later.
2015-08-31 17:15 GMT-03:00 Ludovic Courtès :
> Vicente Vera skribis:
>
>> How can I install a customized .scm package definition?
>>
>> For example, I want to pass some configure flags to Emacs (such as
>> &#x
Hello,
Currently i'm using a Guix binary installation on top of my GNU/Linux
distro. Setup went fine.
So far i've installed only substitutes (everything OK), but there are
some packages that I want to tweak a little.
How can I install a customized .scm package definition?
For example, I want to
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