Alex Kost writes:
> Ricardo is a Master of bioinformatics
Haha! :)
Mark already pushed it. I simply forgot about this patch, my apologies!
~~ Ricardo
Ben Woodcroft (2015-07-05 07:52 +0300) wrote:
> On 27/06/15 22:33, Ben Woodcroft wrote:
>> To me this is problematic in two ways:
>> 1. It works on more than just genomes
>> 2. There is some contention in the field about the use of
>> "prokaryote", since this refers to a paraphyletic group - us hu
Ben Woodcroft writes:
> On 27/06/15 22:33, Ben Woodcroft wrote:
>> To me this is problematic in two ways:
>> 1. It works on more than just genomes
>> 2. There is some contention in the field about the use of
>> "prokaryote", since this refers to a paraphyletic group - us humans
>> are more closel
On 27/06/15 22:33, Ben Woodcroft wrote:
To me this is problematic in two ways:
1. It works on more than just genomes
2. There is some contention in the field about the use of
"prokaryote", since this refers to a paraphyletic group - us humans
are more closely related to Archaea than Bacteria.
On 27/06/15 20:40, Ricardo Wurmus wrote:
+(synopsis "Protein-coding gene prediction for Archaea and Bacteria")
Shouldn’t “Archaea” and “Bacteria” both be lower-cased?
I don't believe so. As I understand it you can use "bacterial" and
"archaeal" with lower case, but here we are referring
Hi again,
another thing just occurred to me. Instead of replacing the install
phase you might just overwrite the INSTALLDIR variable, something like
this:
#:make-flags (list (string-append "INSTALLDIR="
(assoc-ref %outputs "out")))
What do you think?
~
Hi Ben,
> Oops, now all lines <= 80 chars.
looks good to me, except for the synopsis:
> +(synopsis "Protein-coding gene prediction for Archaea and Bacteria")
Shouldn’t “Archaea” and “Bacteria” both be lower-cased?
~~ Ricardo
Oops, now all lines <= 80 chars.
On 27/06/15 09:26, Ben Woodcroft wrote:
A popular tool in microbial ecology.
>From 6e81c91c5e444cddf6e193f22d212b1eee3a5cab Mon Sep 17 00:00:00 2001
From: Ben Woodcroft
Date: Sat, 27 Jun 2015 09:29:23 +1000
Subject: [PATCH] gnu: Add prodigal.
* gnu/packages/b
A popular tool in microbial ecology.
>From ebec585b41d6a2bad6b9b04b07f0003ede389f1a Mon Sep 17 00:00:00 2001
From: Ben Woodcroft
Date: Sat, 27 Jun 2015 09:24:08 +1000
Subject: [PATCH] gnu: Add prodigal.
* gnu/packages/bioinformatics.scm (prodigal): New variable.
---
gnu/packages/bioinformatics.
