Re: “Reproducible research articles, from source code to PDF”

2020-06-22 Thread Ludovic Courtès
Hi Konrad, Konrad Hinsen skribis: > Konrad Hinsen writes: > >> Sounds fine. I am not much of a hackathon expert, so I don't propose >> myself for organizing this, but I can make a preselection of suitable >> submissions to the ReScience challenge (no proprietary software etc.) >> with comments

Re: “Reproducible research articles, from source code to PDF”

2020-06-21 Thread Konrad Hinsen
Konrad Hinsen writes: > Sounds fine. I am not much of a hackathon expert, so I don't propose > myself for organizing this, but I can make a preselection of suitable > submissions to the ReScience challenge (no proprietary software etc.) > with comments about the specific challenges. Here is my l

Re: “Reproducible research articles, from source code to PDF”

2020-06-19 Thread Ludovic Courtès
zimoun skribis: > On Fri, 19 Jun 2020 at 14:04, Ludovic Courtès > wrote: > >> I’d happily defer to Simon; Simon, would you be able to organize this? > > Yesterday evening, I have sent an email to guix-hpc with the subject: > "Let sync Hackathon reproducible and past" for this purpose. :-) > Is

Re: “Reproducible research articles, from source code to PDF”

2020-06-19 Thread zimoun
On Fri, 19 Jun 2020 at 14:04, Ludovic Courtès wrote: > I’d happily defer to Simon; Simon, would you be able to organize this? Yesterday evening, I have sent an email to guix-hpc with the subject: "Let sync Hackathon reproducible and past" for this purpose. :-) Is this email lost? Or somehow blo

Re: “Reproducible research articles, from source code to PDF”

2020-06-19 Thread Ludovic Courtès
Hi, Konrad Hinsen skribis: > Ludovic Courtès writes: > >>> Maybe we could organize a Virtual Hackathon? Over 1 day? Or 2 days? >>> The power of collective motivation. :-) >> >> Sounds like a good idea! Perhaps a one-day hackathon to begin with? >> Early July maybe? > > Sounds fine. I am not

Re: “Reproducible research articles, from source code to PDF”

2020-06-18 Thread Pjotr Prins
On Thu, Jun 18, 2020 at 03:05:42PM +0200, Ludovic Courtès wrote: > Sounds like a good idea! Perhaps a one-day hackathon to begin with? > Early July maybe? If I have no other obligations I am game. Pj.

Re: “Reproducible research articles, from source code to PDF”

2020-06-18 Thread Konrad Hinsen
Ludovic Courtès writes: >> Maybe we could organize a Virtual Hackathon? Over 1 day? Or 2 days? >> The power of collective motivation. :-) > > Sounds like a good idea! Perhaps a one-day hackathon to begin with? > Early July maybe? Sounds fine. I am not much of a hackathon expert, so I don't pr

Re: “Reproducible research articles, from source code to PDF”

2020-06-18 Thread Ludovic Courtès
zimoun skribis: > On Thu, 18 Jun 2020 at 13:42, Ludovic Courtès > wrote: > >>> I'd start somewhat differently: generate diverse use case examples. The >>> contributions to the ReScience reproducibility challenge could be a nice >>> starting point: go through them, one by one, and try to re-imp

Re: “Reproducible research articles, from source code to PDF”

2020-06-18 Thread zimoun
On Thu, 18 Jun 2020 at 13:42, Ludovic Courtès wrote: >> I'd start somewhat differently: generate diverse use case examples. The >> contributions to the ReScience reproducibility challenge could be a nice >> starting point: go through them, one by one, and try to re-implement the >> authors' vari

Re: “Reproducible research articles, from source code to PDF”

2020-06-18 Thread Ludovic Courtès
Hi, Konrad Hinsen skribis: >> I don’t like the phrase “average scientist”, and we’re talking about >> people with a PhD who definitely know how to learn. > > I didn't take that phrase as a reference to ability, but to prior > knowledge. I am pretty sure that anyone who uses Python can also learn

Re: “Reproducible research articles, from source code to PDF”

2020-06-18 Thread Konrad Hinsen
Hi Ludo and Simon, > I don’t like the phrase “average scientist”, and we’re talking about > people with a PhD who definitely know how to learn. I didn't take that phrase as a reference to ability, but to prior knowledge. I am pretty sure that anyone who uses Python can also learn to use Guile, bu

Re: “Reproducible research articles, from source code to PDF”

2020-06-18 Thread Ludovic Courtès
Hi Simon! zimoun skribis: > For example, they are future bridges to think: connect the Guix archive > somehow with zenodo DOI and/or Software Heritage identifier. > > When I read this comment in the review [1]: > > As a final note, I wonder if, and how much, the author's >

Re: “Reproducible research articles, from source code to PDF”

2020-06-17 Thread Maxim Cournoyer
Hi Ludovic! Ludovic Courtès writes: > Hello! > > This new post introduces the work I did to have a fully reproducible > replication (!) of a 13-year old article, using Guix to express the > whole pipeline: > > > https://hpc.guix.info/blog/2020/06/reproducible-resea

Re: “Reproducible research articles, from source code to PDF”

2020-06-17 Thread zimoun
log/2020/06/reproducible-research-articles-from-source-code-to-pdf/ Really cool! IMHO, it even deserves an entry to guix.gnu.org/blog. :-) Aside, I have learnt the interesting project maneage.org. As always, it gives me some food for thought. For example, they are future bridges to think: connect the G

“Reproducible research articles, from source code to PDF”

2020-06-16 Thread Ludovic Courtès
Hello! This new post introduces the work I did to have a fully reproducible replication (!) of a 13-year old article, using Guix to express the whole pipeline: https://hpc.guix.info/blog/2020/06/reproducible-research-articles-from-source-code-to-pdf/ Feedback welcome! Ludo’.