Many thanks for the answers
@Timothy
I know that probtrackx2 support surfaces but I did not manage to make it
work without hectic results (fiber crossing the surfaces used as stop,
combinatorial counting of endpoints ... ), even if FSL seems the most able
to process multi-shell data.
@Donna
I
Hi Matt,
Even if it is marginal a certain number of fibers are in the cortical and
ROIs gray matter as assessed by fdt_paths.nii, I think I already mentioned
this to Saad on fsl list.
Have you been using the fsaverage32k surface as stop/targets or the full
resolution (which I believe would
I’ve used the 32k mesh. Also I restrict the tracking mask not to allow stuff outside the brain (inverse of HCP distributed wmparc file minus the ventricles), so even a few fibers missed don’t go far (--mask= option).
Not sure I understand your other point. Can you have another try at
Hi Basile et al.
We will make this three-vertex count optional in the future, as I agree that it
complicates interpretation of matrix1/3 output.
Cheers
Saad
On 5 Jun 2014, at 12:30, Glasser, Matthew
glass...@wusm.wustl.edumailto:glass...@wusm.wustl.edu wrote:
You could do that but because
Hi Saad,
great, many thanks
cheers
basile
On Thu, Jun 5, 2014 at 6:45 PM, Saad Jbabdi saad.jba...@ndcn.ox.ac.uk
wrote:
Hi Basile et al.
We will make this three-vertex count optional in the future, as I agree
that it complicates interpretation of matrix1/3 output.
Cheers
Saad
