-cifti-convert is not intended to make files that will work nicely as
single-surface files, it is more of a hack for software that can't read
cifti yet:
-cifti-convertDUMP CIFTI MATRIX INTO OTHER FORMATS
The -cifti-separate command is how you take a structure from a cifti file
and tur
I use wb_command -cifti-separate for this purpose.
On Nov 11, 2015, at 10:52 AM, LEVI SOLOMYAK
wrote:
> Dear All,
>
> I am working with a cifti dlabel.nii file. I'm attempting to use those labels
> to create ROI's but i need those files to be in gifti. I have tried various
> ways of doing t
Dear All,
I am working with a cifti dlabel.nii file. I'm attempting to use those
labels to create ROI's but i need those files to be in gifti. I have tried
various ways of doing this with no success.
I have been relying on the following two commands:
wb_command -cifti-label-to-roi
wb_command -cif
I think this might be way more complicated than is needed. I believe there are
structural extended packages that would allow you to run a FreeSurfer command
without needing to replicate FreeSurfer files. As for how to get a
parcellation from an atlas surface to a subject’s volume, I could tell
Hi Craig,
In our usage, the "scout" is indeed the SBRef for a given fMRI scan (although the pipelines are set up such that you can use other "scouts").
What we call "SpinEchoFieldMap_{RL,LR}" during scan collection are not field maps per se, but rather the actual reversed-PE, SE EPIs them
Typically, we care more about the "relative" (frame-to-frame) motion. If you wanted to exclude based on the mean across the whole run you could use the number in the "Movement_RelativeRMS_mean.txt" file. If you wanted to implement a censoring/scrubbing
of individual frames you could use
